LauraB-CWF Run bcfishpass on test #81
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| name: testing-bcfishpass | |
| run-name: ${{ github.actor }} Run bcfishpass on test | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - 'main' | |
| env: | |
| DATABASE_URL: ${{ secrets.DATABASE_URL }} | |
| jobs: | |
| load-csv: | |
| runs-on: ubuntu-latest | |
| environment: testing | |
| container: ghcr.io/smnorris/bcfishpass:main | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Run the jobs | |
| run: | | |
| cp parameters/example_newgraph/*csv parameters/ | |
| jobs/load_csv | |
| load-xings: | |
| runs-on: ubuntu-latest | |
| environment: testing | |
| container: ghcr.io/smnorris/bcfishpass:main | |
| needs: load-csv | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Run the jobs | |
| run: jobs/load_modelled_stream_crossings | |
| prep: | |
| runs-on: ubuntu-latest | |
| environment: testing | |
| container: ghcr.io/smnorris/bcfishpass:main | |
| needs: load-xings | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Run the jobs | |
| run: jobs/model_prep | |
| model: | |
| runs-on: ubuntu-latest | |
| environment: testing | |
| container: ghcr.io/smnorris/bcfishpass:main | |
| needs: prep | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-tags: true | |
| fetch-depth: 0 | |
| - name: Run the jobs | |
| run: | | |
| git config --global --add safe.directory /__w/bcfishpass/bcfishpass | |
| jobs/model_run |