Snakemake-Workflows
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Repositories
- dna-seq-varlociraptor Public
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
snakemake-workflows/dna-seq-varlociraptor’s past year of commit activity - cyrcular-calling Public
A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.
snakemake-workflows/cyrcular-calling’s past year of commit activity - rna-seq-kallisto-sleuth Public
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
snakemake-workflows/rna-seq-kallisto-sleuth’s past year of commit activity - dna-seq-benchmark Public
A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets
snakemake-workflows/dna-seq-benchmark’s past year of commit activity - ngs-test-data Public
A workflow for creating small NGS test data sets, useful for continuous integration.
snakemake-workflows/ngs-test-data’s past year of commit activity - dna-seq-mtb Public
A flavor of https://github.com/snakemake-workflows/dna-seq-varlociraptor preconfigured for molecular tumor boards
snakemake-workflows/dna-seq-mtb’s past year of commit activity - dna-seq-short-read-circle-map Public
A snakemake workflow for calling extrachromosomal circular DNA in Illumina short-read sequencing data with Circle-Map
snakemake-workflows/dna-seq-short-read-circle-map’s past year of commit activity - circular-dna-read-simulation Public Forked from tedil/cyrcular-simulation
snakemake workflow for long and short read simulation of circular DNA
snakemake-workflows/circular-dna-read-simulation’s past year of commit activity
