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MRG: Fix rs214 LCA databases in databases.md (#2690)
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The rs214 links are broken for the LCA files, small fix to point to the
correct URL folder; the URLs for the rs214 LCA DBs did not get updated
in the update of the table for those links.

Currently the DBs in the LCA column of the table are 404ed.

https://sourmash.readthedocs.io/en/latest/databases.html#gtdb-r08-rs214-genomic-representatives-85k

Once the items above are done, and all checks pass, request a review!
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hyphaltip authored Jul 26, 2023
1 parent 351a8c9 commit 7351eb4
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions doc/databases.md
Original file line number Diff line number Diff line change
Expand Up @@ -42,9 +42,9 @@ The GTDB genomic representatives are a low-redundancy subset of Genbank genomes,

| K-mer size | Zipfile collection | SBT | LCA |
| -------- | -------- | -------- | ---- |
| 21 | [download (2.2 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k21.zip) | [download (4.4 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k21.sbt.zip) | [download (189 MB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs207gtdb-rs214-reps.k21.lca.json.gz) |
| 31 | [download (2.2 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k31.zip) | [download (4.4 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k31.sbt.zip) | [download (221 MB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs207/gtdb-rs214-reps.k31.lca.json.gz) |
| 51 | [download (2.2 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k51.zip) | [download (4.4 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k51.sbt.zip) | [download (230 MB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs207/gtdb-rs214-reps.k51.lca.json.gz) |
| 21 | [download (2.2 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k21.zip) | [download (4.4 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k21.sbt.zip) | [download (189 MB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k21.lca.json.gz) |
| 31 | [download (2.2 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k31.zip) | [download (4.4 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k31.sbt.zip) | [download (221 MB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k31.lca.json.gz) |
| 51 | [download (2.2 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k51.zip) | [download (4.4 GB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k51.sbt.zip) | [download (230 MB)](https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db/gtdb-rs214/gtdb-rs214-reps.k51.lca.json.gz) |

### GTDB R08-RS214 all genomes (403k)

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