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150 Open 107 Closed
150 Open 107 Closed
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Issues list

bpipe --help returns status code = 1
#292 opened Jul 2, 2024 by martin-g
Null PID reference
#290 opened May 23, 2024 by kevinkovalchik
2
Activate conda environment and execute command
#285 opened Jun 10, 2023 by nikhilshinde0909
Skip command start for "my command" due to probe mode
#284 opened May 23, 2023 by L-of-IOS
1
bpipe via Conda throws java.lang.NoClassDefFoundError
#283 opened Mar 22, 2023 by marvel64
A fixed error reappeared
#282 opened Mar 6, 2023 by L-of-IOS
2
Installing error in Bpipe on M1 Mac
#281 opened Feb 12, 2023 by Mercilena
2
slurm scheduler not working with slurm-wlm-torque qstat
#280 opened Jan 3, 2023 by nemartins
5
Significant number of critical vulnerabilities reported in dependencies
#273 opened Jun 20, 2022 by slagelwa
3
Allow containers to have different paths to the external ones
#270 opened Feb 16, 2021 by drtconway
Conditional execution of steps
#269 opened Feb 10, 2021 by bistace
bpipe how to get the output path when the -d was defined
#265 opened Dec 12, 2020 by Feng-Zhang
bpipe: line 762: 63827 Killed nohup bash -c "$LAUNCH_CMD" > /dev/null 2>&1
#263 opened Oct 12, 2020 by suyanan
1
previous working version of bpipe script did not work in bpipe 0.9.9.8
#262 opened Mar 4, 2020 by yuanbinru
transform function does not adapt stage naming properly
#260 opened Sep 10, 2019 by gdevenyi
Collecting files with a specific extension also collects folders matching the extension
#258 opened Aug 7, 2019 by ankebusch
forward input is not seen by next stage after a parallel branch
#257 opened Aug 7, 2019 by ssayols
Unable to send notification
#252 opened May 29, 2019 by zwbao
Incorrect file names
#251 opened May 19, 2019 by tirohia
2
@params.txt parsing is various types of broken
#250 opened Apr 18, 2019 by gdevenyi
14
Unable to customize resources for each step using slurm
#245 opened Oct 19, 2018 by tirohia
13
Overzealous shutdown proceedure.
#244 opened Oct 14, 2018 by tirohia
4
Allow ~/.bpipedb to be relocated
#242 opened Aug 29, 2018 by gdevenyi
4
Bpipe exits with code 0 on syntax errors in the pipeline file
#240 opened Jul 3, 2018 by jmqualls
Inputs when pooling results
#239 opened Jun 27, 2018 by hh1985
2
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