v0.3.4

• Stricter chromosome validation. All chromosome names must now be 1-25, X, Y, M, or MT.
  • This is to prevent a problem that happens when people use non-categorical data (like rsid) in the chrom column by accident. Prior attempts at loose validation kept getting bypassed, so now we are strict.
• Allow larger plot regions by default (up to 2Mb).

v0.3.3

• Fix an issue where search box incorrectly used GRCh37 coordinates, even when other builds were used.

v0.3.2

Test improvements for window resize events (a source of recurring and spurious sentry reports).

v0.3.1

• Quietly increase upload limit to 1.25 GB (we won't publicize this just yet, as very big files are rather slow. They are best uploaded during less active parts of the day)
• Improve parsers to better recognize field names from the EBI GWAS catalog file format, and add better error messages to the ingest log when given unsorted data
• Collect general metrics on which file types people are using with "add tabix" mode (nothing specific, just file type)

v0.3.0

Incorporate LocalZoom features for new visualization and comparison options.

User-facing

• Allow users to add tracks from a local (or remote!) Tabix file for comparison to the plot
  • Including new BED track and "user-provided PLINK LD" features
• Readability enhancements to plots (larger fonts, cleaner legends)
• Show a direction of effect arrow on GWAS plots (up or down) when beta and stderr are available

Internal improvements

• Various internal refactorings for data retrieval, and improved caching behavior on pan/zoom
• Add ld_variant to URL to bookmark views more exactly
• Incorporate LZ 0.14.0-beta.2 to gather error and usage reports
• Ignore user-selected LD refvar if the view switches to a different region

v0.2.5

• Collect user feedback for new color-blind friendly "turbo" LD color scheme

v0.2.3

Add anonymous feature level metrics for user insights

v0.2.2

Fix dependency issues with new pip resolver; allow docker to build when pulling newest python images.

v0.2.1

• Fix sort order of top loci table and show ref/alt whenever possible
• Update to the newest version of LocusZoom, fixing some size and style issues
• Improve display of validation errors in "select fields" upload modal
• Display SHA256 of original uploaded file on the summary page, so users can be sure they uploaded the correct file (only visible to file owner)
• Validator now prevents rsIDs from being used in the chromosome field

v0.2.0

• Source code is now publicly available
• Internal code improvements:
  • Docker build is now completely internal and uses restart policy
  • Documentation and dead code cleanup
  • Upgrade dependency versions
• Improved FAQ page for direct links and common questions