A script to utilise the flexibility of a modifiable RtSNE package. It reads data from .csv or .fcs files, manages the data, runs tSNE, runs phenograph (only v2.0.0 and above), then writes the data to .csv and .fcs files.
Go to 'releases' above (https://github.com/sydneycytometry/Adaptable-RtSNE/releases) and download source code for the latest version.
If you use this script in your work, please cite this github using the information below. You can cite the specific version that you used in your work (most recent version = v2.0.0).
v2.0.0 - major update to script structure, and incorporation of phenograph
Ashhurst, T. M. (2017). Adaptable RtSNE v2.0.0. GitHub repository. Repository: https://github.com/sydneycytometry/Adaptable-RtSNE.
v1.0.0 - original script
Ashhurst, T. M. (2017). Adaptable RtSNE v1.0.0. GitHub repository. Repository: https://github.com/sydneycytometry/Adaptable-RtSNE.
In EndNote: citaton can be stored as ‘Computer Program’ or ‘Webpage’.
Author = Ashhurst, Thomas Myles
Year = 2017
Title = Adaptable RtSNE v2.0.0
Journal = GitHub repository
Publisher = Github
Website (copy the whole line) = Repository: https://github.com/sydneycytometry/Adaptable-RtSNE
DOI will follow shortly