fix

taxonomicallyinformedannotation · Dec 18, 2024 · 40a8ca0 · 40a8ca0
1 parent c36f5c7
commit 40a8ca0
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Showing 4 changed files with 6 additions and 4 deletions.
diff --git a/R/fake_ecmdb.R b/R/fake_ecmdb.R
@@ -31,7 +31,8 @@ fake_ecmdb <- function(export) {
     "}]"
   ) |>
     writeLines(fake_export)
-  system(paste("zip", export, fake_export))
+  system(paste("zip", basename(export), fake_export))
+  system(paste("mv", basename(export), export))
   unlink(fake_export)
   return(export)
 }
diff --git a/R/fake_hmdb.R b/R/fake_hmdb.R
@@ -35,7 +35,8 @@ fake_hmdb <- function(export) {
     ""
   ) |>
     writeLines(fake_export)
-  system(paste("zip", export, fake_export))
+  system(paste("zip", basename(export), fake_export))
+  system(paste("mv", basename(export), export))
   unlink(fake_export)
   return(export)
 }
diff --git a/R/get_file.R b/R/get_file.R
@@ -56,7 +56,7 @@ get_file <-
         return(FALSE)
       }
       if (!download_with_retry(url = url, destfile = export)) {
-        message("Failed to download the file after multiple attempts.")
+        stop("Failed to download the file after multiple attempts.")
       }
     } else {
       message("File already exists. Skipping.")

diff --git a/codemeta.json b/codemeta.json
@@ -573,7 +573,7 @@
     "SystemRequirements": null
   },
   "keywords": ["metaboliteannotation", "chemotaxonomy", "scoringsystem", "naturalproducts", "computationalmetabolomics", "taxonomicdistance", "specializedmetabolome"],
-  "fileSize": "2389.008KB",
+  "fileSize": "2388.718KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",