This directory is for the analysis of all SNPs from GWAS Catalog.
Data: All associations in the GWAS Catalog with added ontology annotations (v1.0.1)
Data url: https://www.ebi.ac.uk/gwas/api/search/downloads/alternative
Download date: 02-09-2016, 2:29.
Downloaded GWAS associations file: data/downloaded/gwas_catalog_v1.0.1-associations_e85_r2016-08-25.tsv
Extraction of SNPs:
script: scripts/extract_gwas_snps.py.
Output: data/all_gwas.bed (20,783 non-repeating SNPs from associations)
data/trait_snps (.txt files for mapped traits SNPs)
data/error_log.txt (unresolved data)