Further updates to docker scripts

the-virtual-brain · Sep 21, 2023 · ea83705 · ea83705
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commit ea83705
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/docker/cosimulate_tvb_nest.sh b/docker/cosimulate_tvb_nest.sh
@@ -1,12 +1,12 @@
 #!/bin/sh
 
 echo "Pulling TVB-Multiscale docker image"
-/apps/daint/system/opt/sarus/1.1.0/bin/sarus pull thevirtualbrain/tvb-multiscale:2.0.1
+/apps/daint/system/opt/sarus/1.1.0/bin/sarus pull thevirtualbrain/tvb-multiscale:2.1.0
 
 start=$SECONDS
 
 echo "Start docker container"
-srun -C mc /apps/daint/system/opt/sarus/1.1.0/bin/sarus --debug run --mpi thevirtualbrain/tvb-multiscale:2.0.1 /home/docker/env/neurosci/bin/python /home/docker/packages/tvb-multiscale/docker/installation_test.py
+srun -C mc /apps/daint/system/opt/sarus/1.1.0/bin/sarus --debug run --mpi thevirtualbrain/tvb-multiscale:2.1.0 /home/docker/.local/bin/python /home/docker/packages/tvb-multiscale/docker/installation_test.py
 
 duration=$(( SECONDS - start ))
 

diff --git a/docker/cosimulate_with_staging.sh b/docker/cosimulate_with_staging.sh
@@ -1,12 +1,12 @@
 #!/bin/sh
 
 echo "Pulling TVB-Multiscale docker image"
-/apps/daint/system/opt/sarus/1.1.0/bin/sarus pull thevirtualbrain/tvb-multiscale:2.0.1
+/apps/daint/system/opt/sarus/1.1.0/bin/sarus pull thevirtualbrain/tvb-multiscale:2.1.0
 
 start=$SECONDS
 
 echo "Start docker container"
-srun -C mc /apps/daint/system/opt/sarus/1.1.0/bin/sarus --debug run --mpi --mount=type=bind,source=$PWD,destination=$PWD thevirtualbrain/tvb-multiscale:2.0.1 /bin/bash -c "cd $PWD && /home/docker/env/neurosci/bin/python $1"
+srun -C mc /apps/daint/system/opt/sarus/1.1.0/bin/sarus --debug run --mpi --mount=type=bind,source=$PWD,destination=$PWD thevirtualbrain/tvb-multiscale:2.1.0 /bin/bash -c "cd $PWD && /home/docker/.local/bin/python $1"
 
 duration=$(( SECONDS - start ))
 

diff --git a/docker/hpc/example_script.sh b/docker/hpc/example_script.sh
@@ -10,7 +10,7 @@ export DOCKER_HOME=/home/docker
 export DOCKER_TVB_ROOT=$DOCKER_HOME/packages/tvb-root
 export DOCKER_TVB_MULTISCALE=$DOCKER_HOME/packages/tvb-multiscale
 export DOCKER_WORKDIR=$DOCKER_TVB_MULTISCALE/tvb_multiscale/examples/tvb_nest
-export DOCKER_PYTHON=/usr/bin/python
+export DOCKER_PYTHON=$DOCKER_HOME/.local/bin/python
 export DOCKER_RUN_FILE=/home/docker/packages/tvb-multiscale/tvb_multiscale/examples/tvb_nest/example.py
 export CMD=$DOCKER_PYTHON' '$DOCKER_RUN_FILE