TVB-3109 clean-up

TVB-3109 created pyproject.toml for tvb packages

tvb_bin/setup.py → tvb_bin/pyproject.toml

@@ -23,15 +23,25 @@
 # https://www.thevirtualbrain.org/tvb/zwei/neuroscience-publications
 #
 #
-import shutil
-from setuptools import setup, find_packages
 
-setup(
-    name='tvb_bin',
-    packages=find_packages(),
-    version="2.0",
-    license="GPL-3.0-or-later",
-    author="TVB Team"
-)
 
-shutil.rmtree('tvb_bin.egg-info', True)
+
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[project]
+name = "tvb-bin"
+version = "2.0"
+license = "GPL-3.0-or-later"
+authors = [
+    { name = "TVB Team" },
+]
+
+[tool.hatch.version]
+path = "tvb_bin/__init__.py"
+
+[tool.hatch.build.targets.sdist]
+include = [
+    "/tvb_bin",
+]

tvb_build/package_for_pip.sh

@@ -2,24 +2,25 @@
 
 cd ..
 
+python -m pip install --upgrade build
+
 rm -Rf dist
 mkdir dist
 
 declare -a folders2pack=("tvb_framework" "tvb_library" "tvb_contrib" "tvb_storage")
+
 if [[ "$1" != "" ]]; then
     echo "Received param: " "$1"
     folders2pack=("$1")
 fi
 
 for pipPackage in "${folders2pack[@]}"; do
-
     echo "============================="
     echo " Packing: " $pipPackage
     echo "============================="
 
     cd $pipPackage
-    python setup.py sdist
-    python setup.py bdist_wheel
+    python -m build --sdist --wheel
 
     mv dist/* ../dist/
     rm -R dist
@@ -31,12 +32,11 @@ echo "============================="
 echo " Packing: tvb-rest-client"
 echo "============================="
 cd tvb_framework
-mv setup.py setup_bck.py
-mv setup_rest_client.py setup.py
-python setup.py sdist
-python setup.py bdist_wheel
-mv setup.py setup_rest_client.py
-mv setup_bck.py setup.py
+mv pyproject.toml pyproject_bck.toml
+mv pyproject_rest_client.toml pyproject.toml
+python -m build --sdist --wheel
+mv pyproject.toml pyproject_rest_client.toml
+mv pyproject_bck.toml pyproject.toml
 mv dist/* ../dist/
 rm -R dist
 rm -R build
@@ -46,16 +46,15 @@ echo "============================="
 echo " Packing: tvb-bids-monitor"
 echo "============================="
 cd tvb_framework
-mv setup.py setup_bck.py
-mv setup_bids_monitor.py setup.py
-python setup.py sdist
-python setup.py bdist_wheel
-mv setup.py setup_bids_monitor.py
-mv setup_bck.py setup.py
+mv pyproject.toml pyproject_bck.toml
+mv pyproject_bids_monitor.toml pyproject.toml
+python -m build --sdist --wheel
+mv pyproject.toml pyproject_bids_monitor.toml
+mv pyproject_bck.toml pyproject.toml
 mv dist/* ../dist/
 rm -R dist
 rm -R build
 cd ..
 
 ## After manual check, do the actual deploy on Pypi
-# twine upload dist/*
+# twine upload dist/*

tvb_build/setup.py → tvb_build/pyproject.toml

@@ -1,7 +1,7 @@
 # -*- coding: utf-8 -*-
 #
 #
-# TheVirtualBrain-Framework Package. This package holds all Data Management, and 
+# TheVirtualBrain-Framework Package. This package holds all Data Management, and
 # Web-UI helpful to run brain-simulations. To use it, you also need to download
 # TheVirtualBrain-Scientific Package (for simulators). See content of the
 # documentation-folder for more details. See also http://www.thevirtualbrain.org
@@ -24,17 +24,29 @@
 #
 #
 
-import shutil
-from setuptools import setup, find_packages
 
 
-setup(
-    name='tvb_build',
-    packages=find_packages(),
-    version="2.0",
-    license="GPL-3.0-or-later",
-    author="TVB Team",
-    install_requires=['tvb-library', 'tvb-framework', 'tvb-data']
-)
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
 
-shutil.rmtree('tvb_build.egg-info', True)
+[project]
+name = "tvb-build"
+version = "2.0"
+license = "GPL-3.0-or-later"
+authors = [
+    { name = "TVB Team" },
+]
+dependencies = [
+    "tvb-data",
+    "tvb-framework",
+    "tvb-library",
+]
+
+[tool.hatch.version]
+path = "tvb_build/__init__.py"
+
+[tool.hatch.build.targets.sdist]
+include = [
+    "/tvb_build",
+]

tvb_contrib/pyproject.toml

@@ -0,0 +1,75 @@
+# -*- coding: utf-8 -*-
+#
+#
+#  TheVirtualBrain-Contributors Package. This package holds simulator extensions.
+#  See also http://www.thevirtualbrain.org
+#
+# (c) 2012-2024, Baycrest Centre for Geriatric Care ("Baycrest") and others
+#
+# This program is free software: you can redistribute it and/or modify it under the
+# terms of the GNU General Public License as published by the Free Software Foundation,
+# either version 3 of the License, or (at your option) any later version.
+# This program is distributed in the hope that it will be useful, but WITHOUT ANY
+# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.  See the GNU General Public License for more details.
+# You should have received a copy of the GNU General Public License along with this
+# program.  If not, see <http://www.gnu.org/licenses/>.
+#
+#
+#   CITATION:
+# When using The Virtual Brain for scientific publications, please cite it as explained here:
+# https://www.thevirtualbrain.org/tvb/zwei/neuroscience-publications
+#
+#
+
+
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[project]
+name = "tvb-contrib"
+version = "2.9.2"
+description = "A package with TVB contributed additions to the simulator, useful for scripting."
+readme = "README.rst"
+license = { file = "LICENSE" }
+authors = [
+    { name = "Stuart Knock" },
+    { name = "Dionysios Perdikis" },
+    { name = "Paula Sanz Leon" },
+    { name = "Bogdan Valean" },
+    { name = "Marmaduke Woodman" },
+    { name = "Michiel van der Vlag" },
+]
+maintainers = [
+    { name = "TVB Admin", email = "[email protected]" }
+]
+keywords = [
+    "brain",
+    "contrib",
+    "neuroscience",
+    "simulator",
+    "tvb",
+]
+dependencies = [
+    "lxml",
+    "pylems",
+    "scikit-learn",
+    "tvb-library",
+    "xarray",
+]
+
+[project.urls]
+Download = "https://github.com/the-virtual-brain/tvb-root"
+Homepage = "https://www.thevirtualbrain.org"
+
+[tool.hatch.version]
+path = "tvb/__init__.py"
+
+[tool.hatch.build.targets.sdist]
+include = [
+    "/tvb",
+]
+
+[tool.hatch.build.targets.wheel]
+packages = ["tvb"]