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[TVB-1999] Integrate Zenodo API #691

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[TVB-1999] Integrate Zenodo API #691

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Commits on May 12, 2023

  1. Using pyzenodo3 as a client to connect with Zenodo.

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  2. remove the swp file from git, add .swp extension in gitignore

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Commits on Jun 6, 2023

  1. remove the search related methods from zenodo class, currently we wil… 

    …l just focus on the downloading functionality. If required searching functionalities can be added
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Commits on Jun 7, 2023

  1. add method get_latest_version to fetch the latest version of the Re… 

    …cord
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Commits on Jun 11, 2023

  1. add pooch as a dependancy

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Commits on Jun 12, 2023

  1. add tvb class and tests

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  2. minor nits and fixes

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Commits on Jun 16, 2023

  1. added todo in fetch_data method

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  2. Update tvb_library/tvb/datasets/tvb_data.py

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  3. fixed the absolute path error

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Commits on Jun 17, 2023

  1. added header

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  2. added header

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  3. added DATASETS_FOLDER attribute to config settings.

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  4. some improvements in tests, now from_cls method of connectivity loads… 

    … data using new method
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  5. Merge branch 'pyzenodo' of https://github.com/abhi-glitchhg/tvb-root … 

    …into pyzenodo
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  6. fix typos

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Commits on Jun 20, 2023

  1. extract dir parameter when instantiating the class.

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Commits on Jun 23, 2023

  1. change download_dir to .cache/tvb from .cache/pooch

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Commits on Jun 29, 2023

  1. .

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  2. Merge pull request #675 from abhi-glitchhg/pyzenodo 

    merging to check if ci is happy and green.
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Commits on Jun 30, 2023

  1. fixed the file not found errors with remaining datatypes'

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  2. add types

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  3. Merge pull request #676 from abhi-glitchhg/pyzenodo

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Commits on Jul 6, 2023

  1. removed the data setup from build.yml, fix the errors found in tests

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  2. Merge pull request #677 from abhi-glitchhg/pyzenodo 

    Fixing the dataloading for "edited_connectivity"
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Commits on Jul 8, 2023

  1. replacing tvb_data package from code.

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  2. Merge branch 'TVB-1999-deo' into pyzenodo

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  3. Merge pull request #678 from abhi-glitchhg/pyzenodo 

    removing tvb_data library dependency
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  4. fix tvb_data not found error and one identation error

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  5. Merge branch 'pyzenodo' of https://github.com/abhi-glitchhg/tvb-root … 

    …into pyzenodo
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  6. Merge pull request #679 from abhi-glitchhg/pyzenodo 

    Replacing tvb_data module with tvb_library.datasets
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  7. fix the identation

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  8. Merge pull request #680 from abhi-glitchhg/pyzenodo 

    fix the identations
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  9. fix the data loading issues that i missed earlier.

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  10. some more fixes..

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  11. Merge pull request #681 from abhi-glitchhg/pyzenodo 

    fix the data loading issues that i missed earlier
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Commits on Jul 11, 2023

  1. fix typo

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Commits on Jul 12, 2023

  1. removed the commented lines, removed the tvb_data 

    setup from ci
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  2. fix test; reuse tvbzenododataset instance

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  3. Merge pull request #683 from abhi-glitchhg/pyzenodo 

    Removed tvb_data setup and some cleanup
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Commits on Jul 16, 2023

  1. fix the notebooks

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  2. fixed the notebooks

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  3. trigger for prs as well

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Commits on Jul 22, 2023

  1. fix build_step1.py, added ability to unzip whole data. 

    Also fetch_data accepts relative paths.
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  2. revert back to original notebooks metadata

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  3. Merge pull request #685 from abhi-glitchhg/pyzenodo 

    Update jupyter notebooks and github workflows. Also some more functionalities like unzipping the whole zip file contents and enabling unzipping with relative paths.
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  4. add missing : to the github workflow files. 

    :)
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  5. Merge pull request #686 from abhi-glitchhg/pyzenodo 

    add missing `:` to the github workflow files.
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  6. fixed the silly indentation mistakes in the github actions files.

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Commits on Jul 23, 2023

  1. fix the directory path in the tests

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Commits on Jul 26, 2023

  1. Using pyzenodo3 as a client to connect with Zenodo.

    @abhi-glitchhg
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  2. remove the swp file from git, add .swp extension in gitignore

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  3. remove the search related methods from zenodo class, currently we wil… 

    …l just focus on the downloading functionality. If required searching functionalities can be added
    @abhi-glitchhg
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  4. add method get_latest_version to fetch the latest version of the Re… 

    …cord
    @abhi-glitchhg
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  5. add pooch as a dependancy

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  6. add tvb class and tests

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  7. minor nits and fixes

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  8. added todo in fetch_data method

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  9. fixed the absolute path error

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  10. added header

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  11. added header

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  12. added DATASETS_FOLDER attribute to config settings.

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  13. some improvements in tests, now from_cls method of connectivity loads… 

    … data using new method
    @abhi-glitchhg
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  14. Update tvb_library/tvb/datasets/tvb_data.py

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  15. fix typos

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  16. extract dir parameter when instantiating the class.

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  17. change download_dir to .cache/tvb from .cache/pooch

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  18. .

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  19. fixed the file not found errors with remaining datatypes'

    @abhi-glitchhg
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  20. add types

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  21. removed the data setup from build.yml, fix the errors found in tests

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  22. replacing tvb_data package from code.

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  23. fix tvb_data not found error and one identation error

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  24. fix the identation

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  25. fix the data loading issues that i missed earlier.

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  26. some more fixes..

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  27. fix typo

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  28. removed the commented lines, removed the tvb_data 

    setup from ci
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  29. fix test; reuse tvbzenododataset instance

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  30. fix the notebooks

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  31. fixed the notebooks

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  32. trigger for prs as well

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  33. fix build_step1.py, added ability to unzip whole data. 

    Also fetch_data accepts relative paths.
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  34. revert back to original notebooks metadata

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  35. add missing : to the github workflow files. 

    :)
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  36. fixed the silly indentation mistakes in the github actions files.

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  37. fix the directory path in the tests

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Commits on Jul 28, 2023

  1. add line which was removed accidentally while resolving the conflict

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  2. resolve the conflicts

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  3. typo fix

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Commits on Jul 31, 2023

  1. api change and fix typo

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Commits on Aug 6, 2023

  1. getting missing whitespace around operator error

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  2. revert the change

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  3. fix the pycodestyle issue

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  4. Merge branch 'master' into pyzenodo

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  5. Merge pull request #687 from abhi-glitchhg/pyzenodo 

    Fix the indentation mistakes for workflow files in TVB-1999-deo branch
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Commits on Aug 21, 2023

  1. minor changes

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  2. Merge branch 'pyzenodo' of https://github.com/abhi-glitchhg/tvb-root … 

    …into pyzenodo
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Commits on Aug 22, 2023

  1. fix test fix

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    abhi-glitchhg committed Aug 22, 2023
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Commits on Aug 23, 2023

  1. Merge branch 'the-virtual-brain:master' into pyzenodo

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    abhi-glitchhg authored Aug 23, 2023
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  2. Merge branch 'the-virtual-brain:master' into pyzenodo

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    abhi-glitchhg authored Aug 23, 2023
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  3. Merge pull request #690 from abhi-glitchhg/pyzenodo 

    Update TVB-1999-deo branch
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    abhi-glitchhg authored Aug 23, 2023
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Commits on Aug 26, 2023

  1. update base.py

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    abhi-glitchhg committed Aug 26, 2023
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  2. Merge branch 'pyzenodo' of https://github.com/abhi-glitchhg/tvb-root … 

    …into pyzenodo
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    abhi-glitchhg committed Aug 26, 2023
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  3. update base.py

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    abhi-glitchhg committed Aug 26, 2023
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  4. Merge pull request #692 from abhi-glitchhg/pyzenodo 

    properly raise error in base dataset class
    @abhi-glitchhg
    abhi-glitchhg authored Aug 26, 2023
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