GitHub - tianxiongbb/DailyCode

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Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
BB_BamToBw		BB_BamToBw
BB_BamToBwDetail		BB_BamToBwDetail
BB_Bed2Length.py		BB_Bed2Length.py
BB_Bed2Signal.sh		BB_Bed2Signal.sh
BB_Bed2Signal.sh.temp		BB_Bed2Signal.sh.temp
BB_BedToBigWig.sh		BB_BedToBigWig.sh
BB_BedToGtf		BB_BedToGtf
BB_BedToGtf~		BB_BedToGtf~
BB_Blast		BB_Blast
BB_BuildTrans.sh		BB_BuildTrans.sh
BB_BuildTrans1.sh		BB_BuildTrans1.sh
BB_CAGE_reads_filter.py		BB_CAGE_reads_filter.py
BB_CaculateSmallRNAInfo.py		BB_CaculateSmallRNAInfo.py
BB_ChipseqAggregation.py		BB_ChipseqAggregation.py
BB_ChipseqAggregation_bw.py		BB_ChipseqAggregation_bw.py
BB_CoverageToMatrix.py		BB_CoverageToMatrix.py
BB_EnsembleGtfToGencodeGtf		BB_EnsembleGtfToGencodeGtf
BB_ExonLength.py		BB_ExonLength.py
BB_ExonMerge.sh		BB_ExonMerge.sh
BB_ExonMerge.sh~		BB_ExonMerge.sh~
BB_ExtractFeatureFromNcrnaFa.py		BB_ExtractFeatureFromNcrnaFa.py
BB_ExtractMiRNAFromMirBaseDownload.py		BB_ExtractMiRNAFromMirBaseDownload.py
BB_FastqToBw.sh		BB_FastqToBw.sh
BB_FindMotifPos.py		BB_FindMotifPos.py
BB_GeneToNSGene.sh		BB_GeneToNSGene.sh
BB_GetBinFromGenome.py		BB_GetBinFromGenome.py
BB_GetIntronFromPsl.py		BB_GetIntronFromPsl.py
BB_GtfAddGenename.py		BB_GtfAddGenename.py
BB_GtfToBed6.py		BB_GtfToBed6.py
BB_GtfToBed7_For_Sushi.sh		BB_GtfToBed7_For_Sushi.sh
BB_GtfToElementForEachGene.py		BB_GtfToElementForEachGene.py
BB_GtfToExonForEachGene.py		BB_GtfToExonForEachGene.py
BB_GtfToExonForEachGene.py~		BB_GtfToExonForEachGene.py~
BB_Htseq.sh		BB_Htseq.sh
BB_InsertLength.py		BB_InsertLength.py
BB_InsertMap.sh		BB_InsertMap.sh
BB_InsertNulDis.py		BB_InsertNulDis.py
BB_IntersectBed2Bed.py		BB_IntersectBed2Bed.py
BB_IntersectSignal_Apr21.py		BB_IntersectSignal_Apr21.py
BB_IntronFromExonBed.sh		BB_IntronFromExonBed.sh
BB_IntronFromExonBed.sh~		BB_IntronFromExonBed.sh~
BB_LengthFilter.py		BB_LengthFilter.py
BB_MergeBlastResult.py		BB_MergeBlastResult.py
BB_MergeBlastResult.py~		BB_MergeBlastResult.py~
BB_MergeGene.py		BB_MergeGene.py
BB_NorBw.sh		BB_NorBw.sh
BB_NorBw.sh~		BB_NorBw.sh~
BB_NorHtseqRPM.py		BB_NorHtseqRPM.py
BB_NorHtseqRPM.py~		BB_NorHtseqRPM.py~
BB_PiRNAGeneToTranscriptGTF.py		BB_PiRNAGeneToTranscriptGTF.py
BB_PiRNAPipeline.sh		BB_PiRNAPipeline.sh
BB_Pip_PiRNAGenecall		BB_Pip_PiRNAGenecall
BB_Pip_RNA.sh		BB_Pip_RNA.sh
BB_Pip_SRNA.sh		BB_Pip_SRNA.sh
BB_Pip_SRNA_Mouse.sh		BB_Pip_SRNA_Mouse.sh
BB_Pip_SRNA_Rscript.R		BB_Pip_SRNA_Rscript.R
BB_Pip_SRNA_Rscript_Mouse.R		BB_Pip_SRNA_Rscript_Mouse.R
BB_PslFilter.py		BB_PslFilter.py
BB_PslMap		BB_PslMap
BB_PslMappedLength.py		BB_PslMappedLength.py
BB_PslMap~		BB_PslMap~
BB_PslMergeFilter.py		BB_PslMergeFilter.py
BB_PslToGtf.sh		BB_PslToGtf.sh
BB_QuickHtseq.sh		BB_QuickHtseq.sh
BB_RACEProcess.py		BB_RACEProcess.py
BB_Reciprocal_LiftOver.sh		BB_Reciprocal_LiftOver.sh
BB_SamToSortedBam.sh		BB_SamToSortedBam.sh
BB_SmallRnaFqToPiRnaFq		BB_SmallRnaFqToPiRnaFq
BB_SortBamToStrandBw_pairedend.sh		BB_SortBamToStrandBw_pairedend.sh
BB_SortBamToStrandBw_pairedend.sh~		BB_SortBamToStrandBw_pairedend.sh~
BB_SortBamToStrandBw_singleend.sh		BB_SortBamToStrandBw_singleend.sh
BB_SortBamToStrandBw_singleend.sh~		BB_SortBamToStrandBw_singleend.sh~
BB_SpaceToTab		BB_SpaceToTab
BB_TEMP.py		BB_TEMP.py
BB_TEMP.sh		BB_TEMP.sh
BB_TEMP_IntersectRMSK.sh		BB_TEMP_IntersectRMSK.sh
BB_TEMP_IntersectRMSK.sh~		BB_TEMP_IntersectRMSK.sh~
BB_Temp_Bed7ToResult.sh		BB_Temp_Bed7ToResult.sh
BB_Temp_Bed7ToResult2.sh		BB_Temp_Bed7ToResult2.sh
BB_TranscriptToGene.py		BB_TranscriptToGene.py
BB_bsseq_pipeline_simple.sh		BB_bsseq_pipeline_simple.sh
BB_callpeak_pipeline.sh		BB_callpeak_pipeline.sh
BB_chipseq_pipeline.sh		BB_chipseq_pipeline.sh
BB_dnase_pipeline.sh		BB_dnase_pipeline.sh
BB_dnaseq_pipeline.sh		BB_dnaseq_pipeline.sh
BB_download_GEO.sh		BB_download_GEO.sh
BB_pi_rpm.py		BB_pi_rpm.py
BB_pi_rpm.py~		BB_pi_rpm.py~
BB_plot_chip_dis.R		BB_plot_chip_dis.R
BB_plot_gene_dis.R		BB_plot_gene_dis.R
BB_plot_gene_dis1.R		BB_plot_gene_dis1.R
BB_plot_transposon_dis.R		BB_plot_transposon_dis.R
BB_rnaseq_pipeline.sh		BB_rnaseq_pipeline.sh
BB_rnaseq_pipeline.sh~		BB_rnaseq_pipeline.sh~
BB_rnaseq_pipeline_test.sh		BB_rnaseq_pipeline_test.sh
BB_run_rnaseq_pipeline.sh		BB_run_rnaseq_pipeline.sh
BB_run_rnaseq_pipeline.sh~		BB_run_rnaseq_pipeline.sh~
BB_simple_download_geo.sh		BB_simple_download_geo.sh
BB_smallRNA_map.sh		BB_smallRNA_map.sh
BB_smallRNA_map_for_dm3.sh		BB_smallRNA_map_for_dm3.sh

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python, shell and R script for bioinformatics analysis.

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