📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/

R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE

A unified downloader+preprocessor for cancer genomics datasets

A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research

Walkthrough of the Cancer Cell Line Encyclopedia v2 paper

Python script for extracting dataset from CCLE (Cancer Cell Line Encyclopedia)

A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).

This repository contains code for MFmap (model fidelity map), a semi-supervised generative model integrating gene expression, copy number and mutation data, matching cell lines to cancer subtypes. MFmap compresses high dimensional omics data of cell lines and bulk tumours into subtype informative low dimensional latent representations and predic…

Database connector for the bioinfoDB.hg38 database

CRISPR + CCLE heat map

KD team project - CCLE, PRISM dataset processing