ccle
Here are 11 public repositories matching this topic...
Database connector for the bioinfoDB.hg38 database
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Feb 29, 2024 - TypeScript
This repository contains code for MFmap (model fidelity map), a semi-supervised generative model integrating gene expression, copy number and mutation data, matching cell lines to cancer subtypes. MFmap compresses high dimensional omics data of cell lines and bulk tumours into subtype informative low dimensional latent representations and predic…
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Aug 23, 2021 - Python
A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
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Oct 19, 2024 - Python
Walkthrough of the Cancer Cell Line Encyclopedia v2 paper
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Sep 29, 2020 - Jupyter Notebook
Python script for extracting dataset from CCLE (Cancer Cell Line Encyclopedia)
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Jul 15, 2021 - Python
A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
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Nov 6, 2020 - R
A unified downloader+preprocessor for cancer genomics datasets
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Apr 7, 2024 - Python
📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
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Oct 31, 2024 - R
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