Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.

collection of mass spectrometry imaging workflows

Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

Python interface to detect and quantify intranuclear proteins

A package for processing immunofluorescence (IF) microscopy image data.

Minerva Cloud is a novel cloud-native (AWS) platform for high-dimensional microscopy image storage, management, and visualization.

A Python library for segmentation and classification of objects in microscopy images

IHC scoring of multi-channel images

Minerva Cloud is a novel cloud-based (AWS) software for high-dimensional image management, storage and visualization.

A jupyter notebook about DNA double strand break analysis from fluorescence images using Python

Code for the paper: Deep Learning architectures for generalized immunofluorescence based nuclear image segmentation

Morphometric analysis of neuromuscular junction microscopy images, and protein distribution and localisation analysis of immunohistochemically-labelled microscopy images.

Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.

Morphometric analysis of cells in microscopy images.

Complete analysis pipeline for the segmentation & classification of structures / cells for LungMap images