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error running nullarbor skesa #288

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BettyAC opened this issue Jun 16, 2021 · 3 comments
Open

error running nullarbor skesa #288

BettyAC opened this issue Jun 16, 2021 · 3 comments

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@BettyAC
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BettyAC commented Jun 16, 2021

I am getting the below error
Memory provided is insufficient to do runs in 10 cycles for the read coverage. We find that 16 Gb for 20x coverage of a 5 Mb genome is usually sufficient
make: *** [Makefile:133: s4/contigs.fa] Error 1
make: Leaving directory '...'
@andersgs
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Hi @BettyAC. How much RAM does the machine you are running have? And what organism are you running? skesa is memory intensive. If you are running on a machine with less than 32GB of RAM you are going to get that error.

@BettyAC
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BettyAC commented Jun 16, 2021

Hi
it has 128 GB ram and I am running TB

@andersgs
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Can you upload nullarbor.log, please?

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@andersgs @BettyAC