deploy: 35b66bc

2.3.3/SphericalMeshing/CartesianTriangulations/Ex2-CartesianGrids.html

@@ -492,34 +492,7 @@ <h2>Sample meshes<a class="headerlink" href="#sample-meshes" title="Permalink to
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Square mesh               121	 25921
 Elliptical mesh            21	  1301
 (276,) (276,)
-</pre></div>
-</div>
-<div class="output traceback highlight-ipythontb notranslate"><div class="highlight"><pre><span></span><span class="gt">---------------------------------------------------------------------------</span>
-<span class="ne">ValueError</span><span class="g g-Whitespace">                                </span>Traceback (most recent call last)
-<span class="n">Cell</span> <span class="n">In</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">line</span> <span class="mi">31</span>
-<span class="g g-Whitespace">     </span><span class="mi">28</span> <span class="nb">print</span><span class="p">(</span><span class="n">str_fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s1">&#39;Elliptical mesh&#39;</span><span class="p">,</span> <span class="n">ellip0</span><span class="o">.</span><span class="n">npoints</span><span class="p">,</span> <span class="n">ellipR</span><span class="o">.</span><span class="n">npoints</span><span class="p">))</span>
-<span class="g g-Whitespace">     </span><span class="mi">30</span> <span class="n">randR</span> <span class="o">=</span> <span class="n">stripy</span><span class="o">.</span><span class="n">cartesian_meshes</span><span class="o">.</span><span class="n">random_mesh</span><span class="p">(</span><span class="n">extent</span><span class="p">,</span> <span class="n">nsamples</span><span class="p">)</span>
-<span class="ne">---&gt; </span><span class="mi">31</span> <span class="n">rand0</span> <span class="o">=</span> <span class="n">stripy</span><span class="o">.</span><span class="n">Triangulation</span><span class="p">(</span><span class="n">randR</span><span class="o">.</span><span class="n">x</span><span class="p">[::</span><span class="mi">50</span><span class="p">],</span> <span class="n">randR</span><span class="o">.</span><span class="n">y</span><span class="p">[::</span><span class="mi">50</span><span class="p">])</span>
-<span class="g g-Whitespace">     </span><span class="mi">32</span> <span class="n">rand2</span> <span class="o">=</span> <span class="n">stripy</span><span class="o">.</span><span class="n">Triangulation</span><span class="p">(</span><span class="n">randR</span><span class="o">.</span><span class="n">x</span><span class="p">[::</span><span class="mi">25</span><span class="p">],</span> <span class="n">randR</span><span class="o">.</span><span class="n">y</span><span class="p">[::</span><span class="mi">25</span><span class="p">])</span>
-<span class="g g-Whitespace">     </span><span class="mi">35</span> <span class="nb">print</span><span class="p">(</span><span class="n">str_fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s1">&#39;Random mesh&#39;</span><span class="p">,</span> <span class="n">rand0</span><span class="o">.</span><span class="n">npoints</span><span class="p">,</span> <span class="n">randR</span><span class="o">.</span><span class="n">npoints</span><span class="p">))</span>
-
-<span class="nn">File ~/.local/lib/python3.10/site-packages/stripy/cartesian.py:141,</span> in <span class="ni">Triangulation.__init__</span><span class="nt">(self, x, y, refinement_levels, permute, tree)</span>
-<span class="g g-Whitespace">    </span><span class="mi">138</span> <span class="bp">self</span><span class="o">.</span><span class="n">permute</span> <span class="o">=</span> <span class="n">permute</span>
-<span class="g g-Whitespace">    </span><span class="mi">139</span> <span class="bp">self</span><span class="o">.</span><span class="n">tree</span> <span class="o">=</span> <span class="n">tree</span>
-<span class="ne">--&gt; </span><span class="mi">141</span> <span class="bp">self</span><span class="o">.</span><span class="n">_update_triangulation</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span>
-<span class="g g-Whitespace">    </span><span class="mi">143</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span><span class="n">refinement_levels</span><span class="p">):</span>
-<span class="g g-Whitespace">    </span><span class="mi">144</span>     <span class="n">x</span><span class="p">,</span> <span class="n">y</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">uniformly_refine_triangulation</span><span class="p">(</span><span class="n">faces</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">trisect</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
-
-<span class="nn">File ~/.local/lib/python3.10/site-packages/stripy/cartesian.py:196,</span> in <span class="ni">Triangulation._update_triangulation</span><span class="nt">(self, x, y)</span>
-<span class="nn">    194     raise ValueError(&#39;ierr={}</span> in <span class="ni">trmesh\n{}&#39;.format</span><span class="nt">(ierr, _ier_codes[9999]))</span>
-<span class="g g-Whitespace">    </span><span class="mi">195</span> <span class="k">elif</span> <span class="n">ierr</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-<span class="nn">--&gt; 196     raise ValueError(&#39;ierr={}</span> in <span class="ni">trmesh\n{}&#39;.format</span><span class="nt">(ierr, _ier_codes[ierr]))</span>
-<span class="g g-Whitespace">    </span><span class="mi">198</span> <span class="bp">self</span><span class="o">.</span><span class="n">npoints</span> <span class="o">=</span> <span class="n">npoints</span>
-<span class="g g-Whitespace">    </span><span class="mi">199</span> <span class="bp">self</span><span class="o">.</span><span class="n">_x</span> <span class="o">=</span> <span class="n">x</span>
-
-<span class="ne">ValueError</span>: ierr=-2 in trmesh
-<span class="n">the</span> <span class="n">first</span> <span class="n">three</span> <span class="n">nodes</span> <span class="n">are</span> <span class="n">collinear</span><span class="o">.</span>
-<span class="n">Set</span> <span class="n">permute</span> <span class="n">to</span> <span class="kc">True</span> <span class="ow">or</span> <span class="n">reorder</span> <span class="n">nodes</span> <span class="n">manually</span><span class="o">.</span>
+Random mesh               100	  5000
 </pre></div>
 </div>
 </div>

2.3.3/SphericalMeshing/CartesianTriangulations/Ex4-Gradients.html

@@ -853,10 +853,10 @@ <h2>Derivatives of solution compared to analytic values<a class="headerlink" hre
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>0.048347335 0.24072336
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>0.048985202 0.2443841
 </pre></div>
 </div>
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>0.04880738 0.24497788
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>0.04879181 0.2449923
 </pre></div>
 </div>
 </div>

2.3.3/SphericalMeshing/CartesianTriangulations/Ex5-Smoothing.html

@@ -646,12 +646,12 @@ <h2>Smoothing operations<a class="headerlink" href="#smoothing-operations" title
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>(array([-0.69065833, -0.625951  , -0.7459229 , ...,  0.15694866,
-        -0.07444829, -0.1721751 ], dtype=float32),
- [array([ 0.0644195 ,  0.02488284,  0.0242763 , ..., -0.01852148,
-         -0.00069227, -0.00902285], dtype=float32),
-  array([ 0.24540576,  0.40816653,  0.07307491, ..., -0.42619547,
-         -0.36651105, -0.29960406], dtype=float32)])
+<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>(array([-0.6964785 , -0.63436186, -0.7475453 , ...,  0.15252843,
+        -0.07603396, -0.17448533], dtype=float32),
+ [array([ 0.06474929,  0.02102301,  0.02235528, ..., -0.04317357,
+         -0.02627707, -0.0331846 ], dtype=float32),
+  array([ 0.23077393,  0.39795634,  0.05781872, ..., -0.42479894,
+         -0.35580367, -0.2889486 ], dtype=float32)])
 </pre></div>
 </div>
 </div>

2.3.3/SphericalMeshing/CartesianTriangulations/Ex6-Scattered-Data.html

@@ -592,7 +592,7 @@ <h2>Count heat flow points per triangle<a class="headerlink" href="#count-heat-f
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>number of unique triangles = 272
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>number of unique triangles = 268
 </pre></div>
 </div>
 </div>

2.3.3/_sources/SphericalMeshing/0-Stripy.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "176bb274",
+   "id": "7b704c6d",
    "metadata": {},
    "source": [
     "# Triangulations\n",

2.3.3/_sources/SphericalMeshing/CartesianTriangulations/0-Cartesian.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "612b90c4",
+   "id": "d2031808",
    "metadata": {},
    "source": [
     "# Cartesian Meshes\n",
@@ -21,7 +21,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "2b4164ad",
+   "id": "9c268d94",
    "metadata": {},
    "outputs": [],
    "source": []

2.3.3/_sources/SphericalMeshing/SphericalTriangulations/0-Spherical.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "eff4f30d",
+   "id": "a39f9eeb",
    "metadata": {},
    "source": [
     "# Spherical Meshes\n",