Remove deprecations

aiidalab_widgets_base/elns.py

@@ -124,8 +124,8 @@ def _observe_node(self, _=None):
         if self.node is None or self.eln is None:
             return
 
-        if "eln" in self.node.extras:
-            info = self.node.extras["eln"]
+        if "eln" in self.node.base.extras.all:
+            info = self.node.base.extras.all["eln"]
         else:
             try:
                 q = orm.QueryBuilder().append(

aiidalab_widgets_base/export.py

@@ -10,7 +10,7 @@ class ExportButtonWidget(ipw.Button):
     def __init__(self, process, **kwargs):
         self.process = process
         if "description" not in kwargs:
-            kwargs["description"] = f"Export workflow ({self.process.id})"
+            kwargs["description"] = f"Export workflow ({self.process.pk})"
         if "layout" not in kwargs:
             kwargs["layout"] = {}
         kwargs["layout"]["width"] = "initial"
@@ -27,7 +27,7 @@ def export_aiida_subgraph(self, change=None):  # pylint: disable=unused-argument
 
         fname = os.path.join(tempfile.mkdtemp(), "export.aiida")
         subprocess.call(
-            ["verdi", "archive", "create", fname, "-N", str(self.process.id)]
+            ["verdi", "archive", "create", fname, "-N", str(self.process.pk)]
         )
         with open(fname, "rb") as fobj:
             b64 = base64.b64encode(fobj.read())
@@ -41,7 +41,7 @@ def export_aiida_subgraph(self, change=None):  # pylint: disable=unused-argument
             link.click();
             document.body.removeChild(link);
             """.format(
-                payload=payload, filename=f"export_{self.process.id}.aiida"
+                payload=payload, filename=f"export_{self.process.pk}.aiida"
             )
         )
         display(javas)

aiidalab_widgets_base/process.py

@@ -248,7 +248,7 @@ def show_selected_output(self, change=None):
             clear_output()
             if change["new"]:
                 selected_output = self.process.outputs[change["new"]]
-                self.info.value = f"PK: {selected_output.id}"
+                self.info.value = f"PK: {selected_output.pk}"
                 display(viewer(selected_output))
 
 

pyproject.toml

@@ -29,4 +29,8 @@ filterwarnings = [
     'ignore::DeprecationWarning:jupyter_client',
     'ignore::DeprecationWarning:selenium',
     'ignore::DeprecationWarning:pytest_selenium',
+    # DeprecationWaring internally from aiida-core
+    # see https://github.com/aiidateam/aiida-core/pull/6272/files#top
+    'ignore:Object of type .* not in session, .* operation along .* will not proceed:sqlalchemy.exc.SAWarning',
+    'ignore:The `Code` class is deprecated.*:aiida.common.warnings.AiidaDeprecationWarning',
 ]

tests/test_computational_resources.py

@@ -287,7 +287,7 @@ def test_aiida_code_setup(aiida_localhost):
     assert code.label == "bash"
     assert code.description == "Bash interpreter"
     assert str(code.filepath_executable) == "/bin/bash"
-    assert code.get_input_plugin_name() == "core.arithmetic.add"
+    assert code.default_calc_job_plugin == "core.arithmetic.add"
 
     # Reset the widget and check that a few attributes are reset.
     widget.code_setup = {}

tests/test_export.py

@@ -9,7 +9,7 @@ def test_export_button_widget(multiply_add_completed_workchain, monkeypatch, tmp
 
     process = multiply_add_completed_workchain
     button = export.ExportButtonWidget(process)
-    assert button.description == f"Export workflow ({process.id})"
+    assert button.description == f"Export workflow ({process.pk})"
 
     # Test the export button. monkeypatch the `mkdtemp` function to return a
     # temporary directory in the `tmp_path` fixture to store the export file.