- Make sure you have Java and Python installed.
- Clone this repository to your desired location.
- Make scripts executable with
chmod +x ./setup.sh && chmod +x ./run.sh - Run
setup.shfirst to download all needed tools and setup directory structures. You only need to run it once. - Afterwards, run
run.shfor the actual pipeline. You need to provide--inputfor the raw fastq.gz data. - Find the analyses of your data at
127.0.0.1:8000orlocalhost:8000
-
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A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.
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