Better contact calculation and aggregation #62
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| # This is a basic workflow to help you get started with Actions | |
| name: CI | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master, "*" ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "test" | |
| test: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - name: setup-conda | |
| # You may pin to the exact commit or the version. | |
| # uses: s-weigand/setup-conda@bf65a211e008297225b737b153801ac1231e9758 | |
| uses: s-weigand/[email protected] | |
| with: | |
| # Whether to activate the conda base env (Default: 'true') | |
| activate-conda: false # optional, default is true | |
| # If conda should be updated before running other commands (Default: 'false') | |
| update-conda: false # optional, default is false | |
| # Python version which should be installed with conda (default: 'Default') | |
| python-version: 3.8 # optional, default is default | |
| # Additional channels like 'conda-forge' which can be used to install packages | |
| conda-channels: conda-forge # optional, default is | |
| - name: Install deps | |
| run: conda env update -f environment.yml -n proteins | |
| - name: Install arpeggio env | |
| run: conda env update -f environment-arpeggio.yml -n arpeggio | |
| - name: Run tests | |
| run: | | |
| source activate proteins | |
| pytest |