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updated copasi_process
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AlexPatrie committed Feb 26, 2024
1 parent 55a6481 commit fb6c32f
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Showing 3 changed files with 8 additions and 6 deletions.
4 changes: 4 additions & 0 deletions Dockerfile
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Expand Up @@ -58,3 +58,7 @@ CMD ["poetry", "run", "jupyter", "lab", "--ip=0.0.0.0", "--port=8888", "--no-bro

# PLEASE NOTE: We do not need to add a USER in the Dockerfile as Singularity will handle
# such logic in conversion on the HPC.

# type imports
# dist
# param scan demo/location
4 changes: 2 additions & 2 deletions biosimulator_processes/copasi_process.py
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Expand Up @@ -69,8 +69,8 @@ def fetch_biomodel(term: str, index: int = 0):
# 1. Add useful config params
# 2. Devise use cases
# 3. Update constructor conditionally
# 4. Devise parameter scan

# 4. Devise parameter scan --> create Step() implementation that creates copasi1, 2, 3...
# and provides num iterations and parameter in model_changes

class CopasiProcess(Process):
# TODO: Update this in constructor
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6 changes: 2 additions & 4 deletions scripts/release-container.sh
100644 → 100755
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Expand Up @@ -3,13 +3,11 @@

version="$1"

# PLEASE UPDATE THE LATEST VERSION HERE BEFORE RUNNING. CURRENT: 0.0.3
current="0.0.2"
# PLEASE UPDATE THE LATEST VERSION HERE BEFORE RUNNING. CURRENT: 0.0.4
current="0.0.3"

run="$2"

set -e

if [ "${version}" == "" ]; then
echo "You must pass the container version you wish to release as an argument to this script. Exiting."
exit 1
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