adjusted config_schema to include emission types

vivarium-collective · Dec 1, 2023 · 69c7458 · 69c7458
1 parent d5c8539
commit 69c7458
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Showing 2 changed files with 8 additions and 2 deletions.
diff --git a/process_bigraph/emitter.py b/process_bigraph/emitter.py
@@ -161,7 +161,10 @@ class MongoDatabaseEmitter(DatabaseEmitter):
     default_host = 'localhost:27017'
     client_dict: Dict[int, MongoClient] = {}
     config_schema = {
-        'ports': 'tree[any]'}
+        'ports': 'tree[any]',
+        'emit_limit': 'int',
+        'embed_path': 'tuple[str]'
+    }
 
     @classmethod
     def create_indexes(cls, table: Any, columns: List[Any]) -> None:

diff --git a/process_bigraph/experiments/smoldyn_database.py b/process_bigraph/experiments/smoldyn_database.py
@@ -36,7 +36,10 @@ def run_smoldyn_simulation():
     time_output = simulation.getOutputData('time')
     mol_output = simulation.getOutputData('molecules')
 
-
+    # create an empty instance of database emitter
+    emitter = MongoDatabaseEmitter(config={})
+
+