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39 Open 19 Closed
39 Open 19 Closed
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Issues list

Trouble running ExomeDepth
#63 opened Nov 12, 2024 by hazmup
High Number of Deletion Calls and Correlation Discrepancy in ExomeDepth Analysis
#61 opened Nov 16, 2023 by valeandri
Genotyping Variant Calls
#60 opened Nov 2, 2023 by justin-greenblatt
Creating a Baseline for calling CNV's for XX and XY samples
#59 opened Nov 2, 2023 by justin-greenblatt
Confusion about expected number of CNV calls
#58 opened Sep 21, 2023 by tsin-lau
Error in countBamInGRanges
#56 opened Jul 7, 2023 by Avinash-git-py
Nothing returns for CNV.calls
#55 opened Mar 8, 2023 by lidd77
2
A possible bug: getBamCounts returns 0 for every exon region
#54 opened Mar 7, 2023 by lidd77
how to calculate the absoulte copy number by this tool?
#53 opened Mar 7, 2023 by lidd77
1
Error in creating vignette
#52 opened Oct 28, 2022 by skgs1970
4
ExomeDepth installation fail
#50 opened Oct 5, 2022 by Leelouh
5
Facing some troubles while running ExomeDepth
#47 opened Jun 23, 2022 by frasca17
exomedepth in R 4.1.2
#46 opened Jun 3, 2022 by AntonisSaphetor
unable to find an inherited method for function ‘scanFa’ for signature ‘"logical", "GRanges"’
#45 opened May 21, 2022 by xiucz
Error in [<-.data.frame(*tmp*, , column.name, value = c(NA_character_, : replacement has 2 rows, data has 0
#44 opened Jul 13, 2021 by worker000000
1
error in CallCNVs function
#43 opened Jun 17, 2021 by lmanchon
8
Target or bait, which BED file should I use?
#42 opened Apr 19, 2021 by ghost
Negative BF value
#40 opened Feb 3, 2021 by zgtman
error in getBamCounts:[samopen] no @SQ lines in the header
#39 opened Dec 19, 2020 by jeetendra-kuld
Error in using getBamCounts
#38 opened Nov 27, 2020 by Martaprf
1
Confusing warnings using getBamCounts (ExomeDepth v.1.1.15)
#37 opened Nov 19, 2020 by PaolaD
2
VCF output
#36 opened Oct 19, 2020 by fgvieira
9
R crashes with very specific input
#35 opened Oct 12, 2020 by kendrickkoo
5
Having more than 1 control after similarity search
#33 opened Sep 8, 2020 by Fred-07
1
reads ratios for regions not called as CNVs
#32 opened Jun 9, 2020 by rajitz
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