I am an aspiring bioinformatician, currently undergoing advanced training at the Bioinformatics Institute. A graduate of Lomonosov Moscow State University in field of biology, with wet lab background. Passionate about developing better tools for bioinformatics and routine automation.
Bioinformatics institute project: Pipeline for Loss of heterozygosity regions in exome and genome sequencing data
Currently our team developing pipeline for loss of heterozygosity detection HaploGone
MSc thesis: HIV-1 variability and antiretroviral therapy resistance mutations in the Russian Federation
Assisted in development of novel test system for HIV-1 detection. Performed Sanger sequencing and antiretroveral drug resistance prediction with SierraPy and sierra-local tools
BSc thesis: Effects of hypoxia-inducible factor 1α on immune activation in human atherosclerotic plaques ex vivo
Investigated cytotoxicity of PX-478 (HIF-1α inhibitor) and CoCl2 (HIF-1α activator) and their effect on immunoactivation in human ex-vivo atherosclerotic plaques. Extracted peripheral blood mononuclear cells (PBMC). Performed PBMC and explant short-term hypoxic cultivation.
Software development
- Python: numpy, pandas, seaborn, matplotlib, plotly, sklearn, folium, geopandas, django basics
- R basics: ggplot2, ggtree
- Other: git + GitHub, Docker basics, Markdown, LaTeX, HTML + CSS basics
- Tools: VS-code, Jupyter, RStudio, Overleaf
Machine Learning
Classic ML models (KNN, Kmeans, decision trees, random forest, ensembles) and basic ML concepts
- English: Upper-Intermediate (B2)
- Russian: Native
GitHub Stats