Fix vulnerability #29
Workflow file for this run
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| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: goodsciproj_env | |
| environment-file: environment.yaml | |
| auto-activate-base: false | |
| - name: Conda Info | |
| run: | | |
| conda info | |
| conda list | |
| - name: Activate Conda Environment | |
| run: | | |
| conda init | |
| source /home/runner/.bashrc | |
| conda activate /usr/share/miniconda/envs/goodsciproj_env | |
| conda info --envs | |
| - name: Build Pybind11 module for C++ code | |
| run: | | |
| cmake -S ./ -B ./build | |
| cd build && make | |
| - name: Test with pytest | |
| run: pytest ./tests | |
| - name: Install Doxygen | |
| run: /usr/share/miniconda/envs/goodsciproj_env/bin/doxygen --version | |
| shell: bash | |
| - name: Generate Doxygen Documentation | |
| run: | | |
| cd docs && | |
| mkdir build && | |
| mkdir build/doxygen && | |
| /usr/share/miniconda/envs/goodsciproj_env/bin/doxygen doxygen/doxygen.dox | |
| shell: bash | |
| - name: Build docs | |
| run: | | |
| cd docs && make html | |
| - name: Archive build artifacts (i.e. documentation) | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: html-docs | |
| path: docs/build/html/ | |
| publish: | |
| needs: build | |
| # Only publish documentation when merging into `origin/main`.` | |
| if: "github.event_name == 'push' && github.ref == 'refs/heads/main' && github.repository_owner == 'yoctoyotta1024'" | |
| permissions: | |
| contents: write | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download build artifacts (i.e. documentation) | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: html-docs | |
| path: docs/build/html/ | |
| - name: Publish docs on github pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs/build/html |