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Add in sORF prediction to peptigate using plmutils #22

Merged
merged 13 commits into from
Mar 13, 2024
Merged

Add in sORF prediction to peptigate using plmutils #22

merged 13 commits into from
Mar 13, 2024

Commits on Mar 12, 2024

  1. add rules for plmutils sorf prediction

    @taylorreiter
    taylorreiter committed Mar 12, 2024
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  2. typos and linting

    @taylorreiter
    taylorreiter committed Mar 12, 2024
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  3. typos, switch model specification to config path

    @taylorreiter
    taylorreiter committed Mar 12, 2024
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  4. update combine script to include sORF predictions

    @taylorreiter
    taylorreiter committed Mar 12, 2024
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  5. formatting

    @taylorreiter
    taylorreiter committed Mar 12, 2024
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Commits on Mar 13, 2024

  1. add copy of plmutils models

    @taylorreiter
    taylorreiter committed Mar 13, 2024
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  2. add a download dummy rule for autopeptideml models

    @taylorreiter
    taylorreiter committed Mar 13, 2024
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  3. add dir to plmutils model

    @taylorreiter
    taylorreiter committed Mar 13, 2024
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  4. add plmutils embed docstring

    @taylorreiter
    taylorreiter committed Mar 13, 2024
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  5. use pathlib.Path style paths for plutils section

    @taylorreiter
    taylorreiter committed Mar 13, 2024
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  6. use pathlib.Path style paths for everything else

    @taylorreiter
    taylorreiter committed Mar 13, 2024
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  7. format

    @taylorreiter
    taylorreiter committed Mar 13, 2024
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  8. update input file names and documentation

    @taylorreiter
    taylorreiter committed Mar 13, 2024
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