Args for cdm qc output json filepath and analysis results

[ryanjameskennedy]

CDM needs a qc json output as defined in this issue that is outputted to --qc-results and the usual analysis results outputted to --analysis-results. Essentially we want a conbined qc output produced by prp looking like this:

[
    {
        "software": "quast",
        "version": null,
        "result": {
            "total_length": 2761929,
            "reference_length": 2809422,
            "largest_contig": 188911,
            "n_contigs": 84,
            "n50": 107938,
            "assembly_gc": 32.64,
            "reference_gc": 32.82,
            "duplication_ratio": 1.004
        }
    },
    {
        "software": "postalignqc",
        "version": null,
        "result": {
            "ins_size": 270,
            "ins_size_dev": 259,
            "mean_cov": 60,
            "pct_above_x": {
                "30": 87.4161621758634,
                "1000": 0.0,
                "10": 99.2404637975042,
                "500": 0.00347789180809111,
                "250": 0.0127915681755215,
                "100": 6.22849159705971,
                "1": 99.9462400452715
            },
            "mapped_reads": 1007929,
            "tot_reads": 1140921,
            "iqr_median": 0.616666666666667,
            "dup_pct": 0.0,
            "dup_reads": 0
        }
    },
    {
        "software": "chewbbaca",
        "version": null,
        "result": {
            "n_missing": 192,
        }
    }
]

Also can bump the version (not sure if this is major or minor?)

[mhkc]

Issue on JASEN