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v0.8.0

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@mhkc mhkc released this 15 May 14:08
· 128 commits to master since this release

[0.8.0]

Added

  • Added rerun_bonsai_input to rerun bonsai-prp outputs when output format changes
  • Added symlink_dir as possible filepaths prefix for IGV inputs
  • Added kraken cutoff whereby species prediction needs to have >= 0.01% of read hits
  • Added phylogenetic statistics to result for tb
  • Added source of variant to output

Fixed

  • Handling of tbprofiler v6.2.0 results

Changed

  • Changed all click types to click.Path()
  • Removed ref_accession != bam_ref_genome check