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Stockholm transfer #168

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wants to merge 30 commits into from
Closed

Stockholm transfer #168

wants to merge 30 commits into from

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Jakob37
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@Jakob37 Jakob37 commented Nov 15, 2024

This PR adds a functionality or fixes a bug.
OR
This PR marks a new Gens release. We apply semantic versioning. This is a major/minor/patch release for reasons.

How to test:

  1. how to test it, possibly with real cases/data

Expected outcome:
The functionality should be working
Take a screenshot and attach or copy/paste the output.

Review:

  • code approved by

Discussion points

  • How to deal with the .github workflows set up by Stockholm? (Working with their instance)
  • Addition of case_id. What consequences? I suspect we will need to migrate our Gens db before merge.
  • Updates to preprocessing scripts generate_gens_data.pl and gvcfvaf.pl. Needs to be tested separately? We are using a different script in the ol' wgs repo?
  • Individual ID used in addition to the sample_id and case_id. What is the significance?

@Jakob37
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Jakob37 commented Nov 15, 2024

Switched to cherry picking to give credits where they are due

@Jakob37 Jakob37 closed this Nov 15, 2024
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