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Stockholm transfer #168

Closed
wants to merge 30 commits into from
Closed

Stockholm transfer #168

wants to merge 30 commits into from

Commits on Nov 14, 2024

  1. Rename basic docker file

    @Jakob37
    Jakob37 committed Nov 14, 2024
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  2. DC updates

    @Jakob37
    Jakob37 committed Nov 14, 2024
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Commits on Nov 15, 2024

  1. Typos, remove console logs

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  2. Remove new logs

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  3. Exclude the docker-compose.override file

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  4. Restore subnet

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  5. Restore changes

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  6. Changelog

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  7. Update mongo config

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  8. Fix list of expected database config vars

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  9. Further bed update

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  10. db commands from sthm changes

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  11. Translate certain annotation fields

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  12. Add gunicorn command to Dockerfile

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  13. Change dockerfile to reflect Gens WSGI

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  14. Case name added to the code base

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  15. Additional case name additions

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  16. Rename case_name -> case_id

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  17. Click case-id

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  18. DuplicateKeyError for multiple samples

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  19. Message to dup key warning

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  20. Individual id parameter handling

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  21. Format generate_gens_data.pl

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  22. Update gvcfvaf parsing

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  23. individual_id linking from home sample list updates

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  24. Remove link breaking leading slashes

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  25. Main view's page title to be sample_name

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  26. Workflow version updates

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  27. Docs on adding tracks

    @Jakob37
    Jakob37 committed Nov 15, 2024
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  28. Changelog

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    Jakob37 committed Nov 15, 2024
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