Add sequencing artifact manager

[seallard]

This PR adds a class and utility functions for managing (retrieving and updating) artifacts from lims related to sequencing. This class will be used in the new script for the sample sequencing quality control. Part of project https://github.com/Clinical-Genomics/project-planning/issues/482.

So this class will be a component of the new script replacing https://github.com/Clinical-Genomics/clinical_EPPs/blob/master/EPPs/bcl2fastq.py.

I don't like how the new functions spread out across so many files, please let me know if there are other spots where they belong better or already exist. I don't think there was a super obvious structure to follow, so I bet that can be improved.

Added

• Class for managing artifacts related to sequencing
• Utility function for managing artifacts related to sequencing

This version is a:

• MINOR - when you add functionality in a backwards compatible manner

[ChrOertlin]

Hi looks nice. Made some comments about potential structure changes that could make it more robust with the use of BaseModels instead of nested dicts. Would likely require some work. But up to you.

I think @Karl-Svard has to approve changes here as the code owner, so commetning for now.

[Karl-Svard]

Nicely done! Just had some minor tweaks:

• Renamed variables from sample_artifact to sample_lane_artifacts at several locations. This is to do with "sample artifacts" being an already established term in cg_lims. It's used for a particular type of artifact that all samples get when they originally get created.
• Renamed get_artifact_lims_id to get_artifact_sample_id in order to better convey what it does.
• Renamed some of the set functions to make it more clear that it doesn't necessarily change the values on the sample level.
• Moved the test to match current folder structure.
• Some linting with black.

Please take look and just ask if you wonder anything!

[Karl-Svard]

Sweet! 💯