closes #110

MicrobialGenomics-IrsicaixaOrg · Dec 14, 2023 · 6f4469e · 6f4469e
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -59,7 +59,6 @@ Suggests:
     apeglm,
     ashr,
     Biobase,
-    corncob,
     covr,
     DESeq2,
     devtools,
@@ -77,7 +76,6 @@ Suggests:
     rstatix,
     SummarizedExperiment,
     testthat (>= 3.0.0)
-Remotes: statdivlab/corncob
 Config/testthat/edition: 3
 Depends: 
     R (>= 4.4.0)
@@ -87,7 +85,6 @@ Collate:
     'aldex2.R'
     'ancom.R'
     'bake.R'
-    'corncob.R'
     'dar-package.R'
     'data.R'
     'deseq2.R'

diff --git a/NAMESPACE b/NAMESPACE
@@ -27,7 +27,6 @@ export(recipe)
 export(sample_data)
 export(step_aldex)
 export(step_ancom)
-export(step_corncob)
 export(step_deseq)
 export(step_filter_by_abundance)
 export(step_filter_by_prevalence)
@@ -65,7 +64,6 @@ exportMethods(prep)
 exportMethods(sample_data)
 exportMethods(step_aldex)
 exportMethods(step_ancom)
-exportMethods(step_corncob)
 exportMethods(step_deseq)
 exportMethods(step_filter_by_abundance)
 exportMethods(step_filter_by_prevalence)