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Tran dataset processing
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@mariya
mariya committed Oct 9, 2024
1 parent e3aa3fb commit cccd64d
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174 changes: 174 additions & 0 deletions data/phenotypes/pheno.allium.tran.csv
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9 changes: 9 additions & 0 deletions predict.py
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import pandas as pd
from src.allium.gex_classifier import GEXClassifier

testX = pd.read_csv('/home/mariya/Data/tran/counts.allium.tran.csv', index_col="public_id")
pheno = pd.read_csv('/home/mariya/Development/allium/data/phenotypes/pheno.allium.tran.csv', index_col = "public_id")

gc = GEXClassifier('v2')
result = gc.get_predictions(testX, pheno=pheno)
result.to_csv('/home/mariya/Data/tran/predictions.tran.csv')
9 changes: 0 additions & 9 deletions predict_lilljebjorn.py
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