Merge pull request #41 from matrulda/develop-1098_fix_seqreports_memo…

…ry_problem DEVELOP-1090: Add high memory label to MultiQC jobs
Molmed · May 26, 2021 · 02791ac · 02791ac
2 parents ce9af28 + 80817f8
commit 02791ac
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Showing 3 changed files with 14 additions and 2 deletions.
diff --git a/config/compute_resources.config b/config/compute_resources.config
@@ -1,8 +1,11 @@
 process {
     withName: 'fastq_screen' {
-        memory = '4 G'
+        memory = '4G'
     }
     withName: 'get_QC_thresholds' {
         errorStrategy = 'ignore'
     }
+    withLabel: 'high_memory' {
+        memory = '47G'
+    }
 }
diff --git a/main.nf b/main.nf
@@ -255,6 +255,7 @@ process interop_summary {
 }
 
 process multiqc_per_flowcell {
+    label 'high_memory'
 
     input:
     val runfolder_name              // Run folder name
@@ -286,6 +287,7 @@ process multiqc_per_flowcell {
 }
 
 process multiqc_per_project {
+    label 'high_memory'
 
     input:
     val runfolder_name

diff --git a/nextflow.config b/nextflow.config
@@ -5,7 +5,7 @@ manifest {
     description = 'A Nextflow run folder QC pipeline for SciLifeLab SNP&SEQ platform'
     mainScript = 'main.nf'
     nextflowVersion = '!>=20.01.0'
-    version = '1.0'
+    version = '1.0.1'
 }
 
 profiles {
@@ -16,6 +16,13 @@ profiles {
         executor.name = 'local'
         executor.memory = '12G'
         includeConfig "$baseDir/config/compute_resources.config"
+
+        // Overwrite high_memory label  
+        process {
+            withLabel: 'high_memory' {
+                memory = '12G'
+            }
+        }
     }
 
     irma {