Merge pull request #172 from sylvinite/master

Readded bashrc piper dependency
NationalGenomicsInfrastructure · Jan 16, 2017 · e55fc51 · e55fc51
2 parents 523b0d5 + 0408c54
commit e55fc51
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/roles/ngi_pipeline/templates/sourceme_common.sh.j2 b/roles/ngi_pipeline/templates/sourceme_common.sh.j2
@@ -3,6 +3,10 @@
 
 export CHARON_BASE_URL={{ charon_base_url }}
 
+# Sadly still integral to NGI Pipeline
+# Hopefully possible to remove dependency in a later version
+module load bioinfo-tools piper/{{ piper_module_version }}
+
 # Force English locale as e.g. some downstream scripts depend on the 
 # pipeline outputing data with "." as decimal output instead of Swedish ",". 
 export LC_ALL=en_US.UTF-8