versions

.github/workflows/test.yml

@@ -19,7 +19,7 @@ jobs:
       - name: Setup Nextflow
         uses: nf-core/setup-nextflow@v1
         with:
-          version: "24.04.4"
+          version: "24.10.0"
 
       - name: Install nf-test
         run: |

.gitignore

@@ -7,3 +7,4 @@ trace*
 logs/*
 output*/*
 .nextflow*
+.nf-test*

nextflow.config

@@ -10,7 +10,7 @@ manifest {
   author          = """Luca Cozzuto, Federica Mantica, Toni Hermoso Pulido"""
   homePage        = 'https://github.com/biocorecrg/ExOrthist'
   description     = """ExOrthist is a Nextflow-based pipeline to obtain groups of exon orthologous at all evolutionary timescales."""
-  nextflowVersion = '!>=24.04.2'
+  nextflowVersion = '!>=24.10.0'
   version         = '2.0.0'
   doi             = 'https://doi.org/10.1186/s13059-021-02441-9'
 }
@@ -230,4 +230,3 @@ process {
     ]
   }
 }
-

nextflow_schema.json

@@ -268,6 +268,9 @@
     {
       "$ref": "#/$defs/plot_parameters"
     },
+    {
+      "$ref": "#/$defs/institutional_config_options"
+    },
     {
       "$ref": "#/$defs/notification_options"
     }

tests/nextflow.config

@@ -17,7 +17,7 @@
 
 // Impose same minimum Nextflow version as the pipeline for testing
 manifest {
-    nextflowVersion = '!>=24.04.2'
+    nextflowVersion = '!>=24.10.0'
 }
 
 // Disable all Nextflow reporting options

tests/workflows/main.nf.test.snap

@@ -12,8 +12,8 @@
         ],
         "meta": {
             "nf-test": "0.9.1",
-            "nextflow": "24.04.4"
+            "nextflow": "24.10.0"
         },
-        "timestamp": "2024-10-25T19:47:18.31238939"
+        "timestamp": "2024-11-02T16:22:03.038334081"
     }
 }