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main <- dev #69

Merged
merged 84 commits into from
Oct 15, 2024
Merged

main <- dev #69

merged 84 commits into from
Oct 15, 2024

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bpblanken
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bpblanken and others added 30 commits October 1, 2024 14:18
* Remove crdq sync

* tests

* Update redis.yaml

* Update test_seqr_chart.py

* ws

* all the parens

* Update Chart.yaml

* Update Chart.yaml

* First pass at postgres

* ws

* rename to lib

* rename to lib

* Update reference

* chart builds again

* template

* fix unit tests

* ws

* Tweak image tags

* continue hacking on postgres

* Bump

* No size, mount to /seqr/postgresql

* pg

* add resource request for redis

* no resources

* Update values.yaml

* Lint

* Updates

* get tests passing

* Update with correct dirs

* add default for REFERENCE_DATASETS_DIR

* Update chart and unit tests with correct volume mount, moving all in-memory references out of core chart

* update claim name

* fix test

* Update persistentvolume.yaml

* spacing

* cleaner number

* improve test

* Update values.yaml

* Update unit_tests.yaml

* refactor init and add unit test

* Fix

* Update values.yaml

* tweak test

* Enable add ons by default
* Remove crdq sync

* tests

* Update redis.yaml

* Update test_seqr_chart.py

* ws

* all the parens

* Update Chart.yaml

* Update Chart.yaml

* First pass at postgres

* ws

* rename to lib

* rename to lib

* Update reference

* chart builds again

* template

* fix unit tests

* ws

* Tweak image tags

* continue hacking on postgres

* Bump

* No size, mount to /seqr/postgresql

* pg

* add resource request for redis

* no resources

* Update values.yaml

* Lint

* Updates

* get tests passing

* Update with correct dirs

* add default for REFERENCE_DATASETS_DIR

* Update chart and unit tests with correct volume mount, moving all in-memory references out of core chart

* update claim name

* fix test

* Update persistentvolume.yaml

* spacing

* cleaner number

* improve test

* add pipeline runner chart

* merge

* Update values.yaml

* Get unit test up

* Update unit_tests.yaml

* A few more tweaks

* merge

* refactor init and add unit test

* Fix

* Update values.yaml

* tweak test

* Same memory value

* bump app version

* Enable add ons by default

* add new env var

* change port

* mkdir luigi state
* Remove crdq sync

* tests

* Update redis.yaml

* Update test_seqr_chart.py

* ws

* all the parens

* Update Chart.yaml

* Update Chart.yaml

* First pass at postgres

* ws

* rename to lib

* rename to lib

* Update reference

* chart builds again

* template

* fix unit tests

* ws

* Tweak image tags

* continue hacking on postgres

* Bump

* No size, mount to /seqr/postgresql

* pg

* add resource request for redis

* no resources

* Update values.yaml

* Lint

* Updates

* get tests passing

* Update with correct dirs

* add default for REFERENCE_DATASETS_DIR

* Update chart and unit tests with correct volume mount, moving all in-memory references out of core chart

* update claim name

* fix test

* Update persistentvolume.yaml

* spacing

* cleaner number

* improve test

* add pipeline runner chart

* merge

* Update values.yaml

* Get unit test up

* Update unit_tests.yaml

* A few more tweaks

* merge

* refactor init and add unit test

* Fix

* Update values.yaml

* tweak test

* Same memory value

* bump app version

* Enable add ons by default

* add new env var

* change port

* mkdir luigi state

* Delete some stuff

* add default cronjob

* ws

* try this

* There is a cronjob now

* test

* rsync correct
* Remove crdq sync

* tests

* Update redis.yaml

* Update test_seqr_chart.py

* ws

* all the parens

* Update Chart.yaml

* Update Chart.yaml

* First pass at postgres

* ws

* rename to lib

* rename to lib

* Update reference

* chart builds again

* template

* fix unit tests

* ws

* Tweak image tags

* continue hacking on postgres

* Bump

* No size, mount to /seqr/postgresql

* pg

* add resource request for redis

* no resources

* Update values.yaml

* Lint

* Updates

* get tests passing

* Update with correct dirs

* add default for REFERENCE_DATASETS_DIR

* Update chart and unit tests with correct volume mount, moving all in-memory references out of core chart

* update claim name

* fix test

* Update persistentvolume.yaml

* spacing

* cleaner number

* improve test

* add pipeline runner chart

* merge

* Update values.yaml

* Get unit test up

* Update unit_tests.yaml

* A few more tweaks

* merge

* Add seqr platform chart

* refactor init and add unit test

* Fix

* Update values.yaml

* tweak test

* Same memory value

* bump app version

* Enable add ons by default

* add new env var

* change port

* mkdir luigi state

* Delete some stuff

* add default cronjob

* ws

* try this

* There is a cronjob now

* test

* rsync correct

* Bump chart versions

* bump stuff

* bump

* move persistent volume

* bump chart lock

* versions

* bump

* bump

* conditional

* Bump

* Add default var

* change name

* add values

* a bit more

* ws

* remove notes

* add notes

* nodeport futzing

* Comments

* delete me

* Docs

* more docs

* more

* docs

* regenerate

* html

* a few comments

* Add clarifying example

* dev version

* pipeline runner enabled flag

* bump deps

* bump
@bpblanken bpblanken merged commit ee6ecea into main Oct 15, 2024
4 checks passed
@bpblanken bpblanken deleted the dev branch October 15, 2024 17:03
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1 participant