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main <- dev #69
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main <- dev #69
Commits on Oct 1, 2024
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Commits on Oct 3, 2024
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Add
postgres
support intoseqr
app chart. (#63)* Remove crdq sync * tests * Update redis.yaml * Update test_seqr_chart.py * ws * all the parens * Update Chart.yaml * Update Chart.yaml * First pass at postgres * ws * rename to lib * rename to lib * Update reference * chart builds again * template * fix unit tests * ws * Tweak image tags * continue hacking on postgres * Bump * No size, mount to /seqr/postgresql * pg * add resource request for redis * no resources * Update values.yaml * Lint * Updates * get tests passing * Update with correct dirs * add default for REFERENCE_DATASETS_DIR * Update chart and unit tests with correct volume mount, moving all in-memory references out of core chart * update claim name * fix test * Update persistentvolume.yaml * spacing * cleaner number * improve test * Update values.yaml * Update unit_tests.yaml * refactor init and add unit test * Fix * Update values.yaml * tweak test * Enable add ons by default
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* Remove crdq sync * tests * Update redis.yaml * Update test_seqr_chart.py * ws * all the parens * Update Chart.yaml * Update Chart.yaml * First pass at postgres * ws * rename to lib * rename to lib * Update reference * chart builds again * template * fix unit tests * ws * Tweak image tags * continue hacking on postgres * Bump * No size, mount to /seqr/postgresql * pg * add resource request for redis * no resources * Update values.yaml * Lint * Updates * get tests passing * Update with correct dirs * add default for REFERENCE_DATASETS_DIR * Update chart and unit tests with correct volume mount, moving all in-memory references out of core chart * update claim name * fix test * Update persistentvolume.yaml * spacing * cleaner number * improve test * add pipeline runner chart * merge * Update values.yaml * Get unit test up * Update unit_tests.yaml * A few more tweaks * merge * refactor init and add unit test * Fix * Update values.yaml * tweak test * Same memory value * bump app version * Enable add ons by default * add new env var * change port * mkdir luigi state
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Make check new samples a cronjob. (#67)
* Remove crdq sync * tests * Update redis.yaml * Update test_seqr_chart.py * ws * all the parens * Update Chart.yaml * Update Chart.yaml * First pass at postgres * ws * rename to lib * rename to lib * Update reference * chart builds again * template * fix unit tests * ws * Tweak image tags * continue hacking on postgres * Bump * No size, mount to /seqr/postgresql * pg * add resource request for redis * no resources * Update values.yaml * Lint * Updates * get tests passing * Update with correct dirs * add default for REFERENCE_DATASETS_DIR * Update chart and unit tests with correct volume mount, moving all in-memory references out of core chart * update claim name * fix test * Update persistentvolume.yaml * spacing * cleaner number * improve test * add pipeline runner chart * merge * Update values.yaml * Get unit test up * Update unit_tests.yaml * A few more tweaks * merge * refactor init and add unit test * Fix * Update values.yaml * tweak test * Same memory value * bump app version * Enable add ons by default * add new env var * change port * mkdir luigi state * Delete some stuff * add default cronjob * ws * try this * There is a cronjob now * test * rsync correct
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Commits on Oct 7, 2024
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* Remove crdq sync * tests * Update redis.yaml * Update test_seqr_chart.py * ws * all the parens * Update Chart.yaml * Update Chart.yaml * First pass at postgres * ws * rename to lib * rename to lib * Update reference * chart builds again * template * fix unit tests * ws * Tweak image tags * continue hacking on postgres * Bump * No size, mount to /seqr/postgresql * pg * add resource request for redis * no resources * Update values.yaml * Lint * Updates * get tests passing * Update with correct dirs * add default for REFERENCE_DATASETS_DIR * Update chart and unit tests with correct volume mount, moving all in-memory references out of core chart * update claim name * fix test * Update persistentvolume.yaml * spacing * cleaner number * improve test * add pipeline runner chart * merge * Update values.yaml * Get unit test up * Update unit_tests.yaml * A few more tweaks * merge * Add seqr platform chart * refactor init and add unit test * Fix * Update values.yaml * tweak test * Same memory value * bump app version * Enable add ons by default * add new env var * change port * mkdir luigi state * Delete some stuff * add default cronjob * ws * try this * There is a cronjob now * test * rsync correct * Bump chart versions * bump stuff * bump * move persistent volume * bump chart lock * versions * bump * bump * conditional * Bump * Add default var * change name * add values * a bit more * ws * remove notes * add notes * nodeport futzing * Comments * delete me * Docs * more docs * more * docs * regenerate * html * a few comments * Add clarifying example * dev version * pipeline runner enabled flag * bump deps * bump
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Commits on Oct 8, 2024
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Commits on Oct 9, 2024
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Commits on Oct 10, 2024
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