1.6.2 - Bugfix release

Fixed bug in generateCavemanVCFUnatchedNormalPanel.c where q was not read at commandline

1.6.1 - Bugfix to alg_bean reading code

Fix added in alg_bean_parse_str_list for dynamic memory allocation as larger strings caused memory errors.

1.6.0 Cram support added

• Cram support added using htslib
• Setup script to download and compile htslib with patch (required for CRAM support) before running make.
• Added 2015 and date additional info to licenses in all files
• Fixes #30 , #22

1.5.3 Release

Made SQ line parsing more robust.

1.5.2 Release

Fixes no analysis double free error.

Stable release - 1.5.1

Enhancements

1. Split step now uses an iterative method rather than fetch to create more evenly sized split sections
2. Makefile now creates a completely standalone binary executable by avoiding compiling with the libhts.so library and using the libhts.a instead.

Bugfixes

1. Fixed issue in estep.c where no analysis file was opened later than the first potential write.

Pre release of 1.5.1

Enhancements
Split step now uses an iterative method rather than fetch to create more evenly sized split sections
Makefile now creates a completely standalone binary executable by avoiding compiling with the libhts.so library and using the libhts.a instead.

Bugfixes
Includes bugfix to estep where no analysis file was opened too late.

Pre release of 1.5.0

Enhancements
Split step now uses an iterative method rather than fetch to create more evenly sized split sections

Bugfixes
Includes bugfix to estep where no analysis file was opened too late.

Stable release - 1.4.3

Merge pull request #17 from cancerit/dev

Merge to master for 1.4.3 release

Stable version, from dev branch, pre release - 1.3.3

Bugfix release to correct genotype swapping issue.