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Releases: cancerit/CaVEMan

split memory bug hotfix

25 Oct 16:15
f00b84e
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Fix a bug that would occasionally cause split to crash when running with a single thread. Also add debug option to setup.sh

What's Changed

  • fix index crash due to bad chr_name malloc (and other things as I went) by @blex-max in #124
  • merge for hotfix release by @blex-max in #125

Full Changelog: 1.15.4...1.15.5

1.15.4 - normal panel generation bugfix

14 Jun 12:46
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Fixed bugs in normal panel generation, i.e. generateCavemanUMNormVCF executable, and eased install process. Core caveman executable remains unchanged compared to tag 1.15.3, but has changed since previous release 1.14.0

What's Changed

New Contributors

Full Changelog: 1.14.0...1.15.4

1.14.0 - Speed improvements

19 Nov 16:51
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  • Making species and assembly required commandline arguments in the estep
  • Change method by which read position index is resolved. Results in time saving.
  • linasm is now required linasm
  • New log and exp functions from linasm

Hotfix - 1.13.8

11 Oct 10:45
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  • Use gzputs instead of gzprintf when writing reference contig lines

Hotfix - 1.13.7

27 Sep 13:02
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Hotfix - 1.13.7 Pre-release
Pre-release
  • fix extra space in zlib version get command in setup.sh

Hotfix - 1.13.6

27 Sep 12:33
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Hotfix - 1.13.6 Pre-release
Pre-release
  • modify how zlib version is detected in the setup.sh script

Hotfix - 1.13.5

09 Sep 09:29
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Hotfix - 1.13.5 Pre-release
Pre-release
  • Remove printf that causes all contigs to be printed to stderr.

Hotfix - 1.13.4

08 Sep 16:59
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Hotfix - 1.13.4 Pre-release
Pre-release
  • Fix incorrect file path introduced in 1.13.3
  • Fixes #82

Hotfix - 1.13.3

07 Sep 15:29
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Hotfix - 1.13.3 Pre-release
Pre-release
  • Add gzbuffer call after gzopen to ensure we don't hit the limit where many contigs are printed
  • Added unit test for additional methods
  • Fixes #77
  • Update license dates

1.13.1 - Hotfix

10 Mar 19:17
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1.13.1

  • Ensure all sentinel calls return non-zero exit code.