Stable version, from dev branch, pre release - 1.2.12

Warnings from compilation removed via minor code changes.
Checks added for erroneous calls with regard to variant allele counts and genotypes. A warning will be emitted for affected positions.

Stable version, from dev branch, pre release - 1.2.10

Added cn_access and estep code to allow max copy number

Stable version, from dev branch, pre release - 1.2.9

Stable version, from dev branch, pre release - 1.2.9
Only changes are moved testData to separate test file

Stable version, from dev branch, pre release - 1.2.8

Added ability to deal with bed and non bed cn files depending on exte…

Stable version 1.2.7 released from dev initially for testing

Reverted indel pileup issue introduced in previous tag 1.2.6

Pre release of 1.2.5

Added NOTPARALLEL to test so that the -j option doesn't break make