Merge pull request #41 from clinical-genomics-uppsala/parabricks #231
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| name: Snakefmt | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - main | |
| pull_request: | |
| branches: | |
| - develop | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| snakefmt: | |
| name: Snakefmt | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out the repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Lint Code Base | |
| uses: github/super-linter@v4 | |
| env: | |
| DEFAULT_BRANCH: main | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| OUTPUT_FOLDER: .github/linters/report | |
| VALIDATE_ALL_CODEBASE: false | |
| VALIDATE_SNAKEMAKE_SNAKEFMT: true |