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Merge pull request #54 from clinical-genomics-uppsala/develop #289

Merge pull request #54 from clinical-genomics-uppsala/develop

Merge pull request #54 from clinical-genomics-uppsala/develop #289

name: Snakemake dry run
on:
push:
branches:
- develop
- main
pull_request:
branches:
- develop
- main
workflow_dispatch:
jobs:
snakemake-dry-run:
name: Run snakemake dry run
runs-on: ubuntu-latest
steps:
- uses: actions/[email protected]
- name: Set up Python 3.9
uses: actions/[email protected]
with:
python-version: 3.9
- name: Install requirements.txt
run: |
pip install -r requirements.txt
- name: Install requirements.test.txt
run: |
pip install -r requirements.test.txt
- name: snakemake dry run
working-directory: .tests/integration
run: |
snakemake --configfiles ../../config/config.yaml config.yaml -n -s ../../workflow/Snakefile