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feat: filter snvs #62

Closed
wants to merge 11 commits into from
Closed

feat: filter snvs #62

wants to merge 11 commits into from

Commits on Aug 15, 2024

  1. refactor: add decompose and normalizing for t vcfs

    @elleira
    elleira committed Aug 15, 2024
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Commits on Aug 19, 2024

  1. refactor: add decompose and normalizing to tn-vcfs

    @elleira
    elleira committed Aug 19, 2024
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Commits on Aug 20, 2024

  1. refactor: update mutect to tsv script to include normal af and dp for… 

    … tn samples
    @elleira
    elleira committed Aug 20, 2024
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  2. feat: add preliminary soft filters

    @elleira
    elleira committed Aug 20, 2024
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Commits on Aug 21, 2024

  1. chore: small typos and fixes

    @elleira
    elleira committed Aug 21, 2024
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Commits on Sep 5, 2024

  1. refactor: change snv dp filter to 10x

    @elleira
    elleira committed Sep 5, 2024
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Commits on Sep 6, 2024

  1. refactor: add consequnce filter to snvs

    @elleira
    elleira committed Sep 6, 2024
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Commits on Sep 11, 2024

  1. refactor: merge vep rules for t and tn into one rule

    @elleira
    elleira committed Sep 11, 2024
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  2. feat: add n_ratio annotation to tn vcfs

    @elleira
    elleira committed Sep 11, 2024
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  3. feat: filter out variants with n_ratio lgt 5

    @elleira
    elleira committed Sep 11, 2024
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  4. fix: update annotate_ratio output format, filter ratio to >5, set N_r… 

    …atio to one value in annotation
    @elleira
    elleira committed Sep 11, 2024
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