fix: Update input files for multiqc report

clinical-genomics-uppsala · Sep 26, 2023 · 84550c3 · 84550c3
1 parent 76113ab
commit 84550c3
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/config/config.yaml b/config/config.yaml
@@ -238,8 +238,13 @@ multiqc:
         - "qc/fastqc/{sample}_{type}_{flowcell}_{lane}_{barcode}_fastq1_fastqc.zip"
         - "qc/fastqc/{sample}_{type}_{flowcell}_{lane}_{barcode}_fastq2_fastqc.zip"
         - "qc/mosdepth/{sample}_{type}.mosdepth.summary.txt"
+        - "qc/mosdepth_bed/{sample}_{type}.per-base.bed.gz"
+        - "qc/mosdepth_bed/{sample}_{type}.thresholds.bed.gz"
+        - "qc/mosdepth_bed/{sample}_{type}.regions.bed.gz"
         - "qc/mosdepth/{sample}_{type}.mosdepth.region.dist.txt"
         - "qc/mosdepth/{sample}_{type}.mosdepth.global.dist.txt"
+        - "qc/peddy/peddy.peddy.ped"
+        - "qc/peddy/peddy.background_pca.json"
         - "qc/peddy/peddy.ped_check.csv"
         - "qc/peddy/peddy.sex_check.csv"
         - "qc/peddy/peddy.het_check.csv"