feat: handle cases in the sample sheet where the sex is unknown

clinical-genomics-uppsala · Aug 21, 2023 · ad0c5b1 · ad0c5b1
1 parent 9eabd82
commit ad0c5b1
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/extract_sample_sheet_info.py b/extract_sample_sheet_info.py
@@ -12,6 +12,8 @@ def translate_sex(sex_code):
         sex = "male"
     elif sex_code == "K":
         sex = "female"
+    elif sex_code == "O":
+        sex = "unknown"
     else:
         print('Sex is not specified correctly in the Sample Sheet')
         sys.exit(1)