Merge pull request #77 from clinical-genomics-uppsala/padraicc-patch-4

fix: change config get
clinical-genomics-uppsala · Jun 26, 2024 · d0270c3 · d0270c3
2 parents aca2c26 + 5392c18
commit d0270c3
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -294,9 +294,7 @@ def compile_output_list(wildcards):
                     for flowcell in set([u.flowcell for u in units.loc[(sample, unit_type)].dropna().itertuples()])
                     for barcode in set([u.barcode for u in units.loc[(sample, unit_type)].dropna().itertuples()])
                     for lane in set([u.lane for u in units.loc[(sample, unit_type)].dropna().itertuples()])
-                    for str_panel in [
-                        panel_list.split(".")[0] for panel_list in config.get("reference", {}).get("str_panels", "")
-                    ]
+                    for str_panel in [panel_list.split(".")[0] for panel_list in config["reference"]["str_panels"]]
                 ]
             )