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chore: dev to main #83

Merged
merged 18 commits into from
Aug 29, 2024
Merged

chore: dev to main #83

merged 18 commits into from
Aug 29, 2024

Commits on Aug 20, 2024

  1. feat: remove tiddit from svdb merge and use --no_intra in merge

    padraicc committed Aug 20, 2024
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  2. feat: exclude POLG variants from population allele frequency filter

    padraicc committed Aug 20, 2024
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  3. feat: update tiddit version

    padraicc committed Aug 20, 2024
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  4. chore: specify container for each vep rule

    padraicc committed Aug 20, 2024
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Commits on Aug 27, 2024

  1. feat: exclude POLG from allele frequency filter

    padraicc committed Aug 27, 2024
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  2. feat: exclude homozygous deletions from the pytorQ0 filter

    padraicc committed Aug 27, 2024
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  3. feat: make it possible to configure vep cache type

    padraicc committed Aug 27, 2024
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  4. chore: update test and bianca config files

    padraicc committed Aug 27, 2024
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  5. refactor: access config in coverage script and remove as an input

    padraicc committed Aug 27, 2024
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Commits on Aug 28, 2024

  1. feat: hardfilter cnvpytor with bcftools

    padraicc committed Aug 28, 2024
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  2. Update config.yaml

    @padraicc
    padraicc authored Aug 28, 2024
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  3. Update resources.yaml

    @padraicc
    padraicc authored Aug 28, 2024
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Commits on Aug 29, 2024

  1. chore: remove commented out code

    padraicc committed Aug 29, 2024
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  2. style: snakefmt format suggestion

    padraicc committed Aug 29, 2024
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  3. Merge pull request #81 from clinical-genomics-uppsala/update_svdb_merge 

    feat: remove tiddit from svdb merge and use --no_intra in merge
    @padraicc
    padraicc authored Aug 29, 2024
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  4. docs: update dag image

    padraicc committed Aug 29, 2024
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  5. docs: update README

    padraicc committed Aug 29, 2024
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  6. Merge pull request #82 from clinical-genomics-uppsala/update_svdb_merge 

    docs: update dag image
    @padraicc
    padraicc authored Aug 29, 2024
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