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fix(jumble): Update config.data.hg38.yaml
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jonca79 authored Nov 5, 2024
1 parent 7b22ec5 commit 6a8621d
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion config/config.data.hg38.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -119,7 +119,7 @@ hotspot_report:
ENC: "{{PROJECT_DESIGN_DATA}}/GMS560/reports/ENC_hotspots_240919_hg38.csv"

# jumble_run:
# normal_reference: "{{PROJECT_DESIGN_DATA}}/GMS560/cnv/jumble/jumble.combined.filtered.50.PoN.hg19.RDS"
# normal_reference: "{{PROJECT_DESIGN_DATA}}/GMS560/PoN/jumble.combined.filtered.50.PoN.hg19.RDS"

manta_config_t:
extra: "--exome --callRegions {{PROJECT_DESIGN_DATA}}/GMS560/design/pool1_pool2.sort.merged.padded20.cnv200.hg38.split_fusion_genes.reannotated.230222.bed.gz"
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