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fix: make umi tmb similar to tmb #417

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merged 2 commits into from
Feb 29, 2024
Merged

fix: make umi tmb similar to tmb #417

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c525c0e
fix: make umi tmb similar to tmb
jonca79 Feb 26, 2024
ef2bcaf
fix: min 1% AF
jonca79 Feb 26, 2024
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14 changes: 7 additions & 7 deletions config/config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -336,17 +336,17 @@ tmb:
nssnv_tmb_correction: 0.84

tmb_umi:
af_lower_limit: 0.000
af_upper_limit: 0.994
af_germline_lower_limit: 0.3
af_germline_upper_limit: 0.7
af_lower_limit: 0.01
af_upper_limit: 0.99
af_germline_lower_limit: 0.47
af_germline_upper_limit: 0.53
artifacts: ""
background_panel: ""
db1000g_limit: 0.0001
dp_limit: 300
dp_limit: 100
gnomad_limit: 0.0001
vd_limit: 0
nr_avg_germline_snvs: 0.0
vd_limit: 15
nr_avg_germline_snvs: 2.0
nssnv_tmb_correction: 0.84

vardict:
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